RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 KALRNO60229 2985 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 GOLGA8MH3BSY2 632 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 MATN2O00339 956 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 CD3EAPO15446 510 aaKnown RBP18.69■□□□□ 0.58
CLN3-260ENST00000637578 ZNF28P17035 718 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 MGAT1P26572 445 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 ARNTP27540 789 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 NMBRP28336 390 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 HSD11B2P80365 405 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 TAF1BQ53T94 588 aaPredicted RBP18.69■□□□□ 0.58
CLN3-260ENST00000637578 ARMC6Q6NXE6 501 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 C8orf74Q6P047 294 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 CYB5D1Q6P9G0 228 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 MMGT1Q8N4V1 131 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 SIDT2Q8NBJ9 832 aaKnown RBP18.69■□□□□ 0.58
CLN3-260ENST00000637578 MCUQ8NE86 351 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 OR52E1Q8NGJ3 308 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 ERP44Q9BS26 406 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 ULBP3Q9BZM4 244 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 TWSG1Q9GZX9 223 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 SRMSQ9H3Y6 488 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 SYBUQ9NX95 663 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 POMT2Q9UKY4 750 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 ATRXP46100 2492 aa18.69■□□□□ 0.58
CLN3-260ENST00000637578 LOC101059948A0A1B0GTJ6 334 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 UBA6A0AVT1 1052 aaPredicted RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 EIF4E1BA6NMX2 242 aaKnown RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 F8W8V4 182 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 BTN3A3O00478 584 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SEC31AO94979 1220 aaKnown RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 ZBTB11O95625 1053 aaPredicted RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 PRB1P04280 392 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 POLR2CP19387 275 aaPredicted RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 CCR7P32248 378 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 RPL21P46778 160 aaKnown RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 TTPAP49638 278 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SARNPP82979 210 aaKnown RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 KCNAB1Q14722 419 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 LINC00303Q3SY05 128 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 CAND1Q86VP6 1230 aaKnown RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 PPP1R3BQ86XI6 285 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 MPP5Q8N3R9 675 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 ESX1Q8N693 406 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SNF8Q96H20 258 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SLC45A3Q96JT2 553 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 NRTNQ99748 197 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 LRRC1Q9BTT6 524 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 PDE7BQ9NP56 450 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 ANAPC5Q9UJX4 755 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SOX13Q9UN79 622 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 CDYLQ9Y232 598 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 BTRCQ9Y297 605 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SNX24Q9Y343 169 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 AVILO75366 819 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 GPC4O75487 556 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SPAG6O75602 509 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 STAT5AP42229 794 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 ACY1Q03154 408 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 PRKAA1Q13131 559 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 DUPD1Q68J44 220 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 NAPRTQ6XQN6 538 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 PCGF5Q86SE9 256 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 LDB1Q86U70 411 aaPredicted RBP18.68■□□□□ 0.58
CLN3-260ENST00000637578 HOOK3Q86VS8 718 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 AMIGO1Q86WK6 493 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 TBC1D21Q8IYX1 336 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 ADGRF3Q8IZF5 1079 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 MFSD3Q96ES6 412 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 PPM1MQ96MI6 270 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 SERPINB12Q96P63 405 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 PITPNM3Q9BZ71 974 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 P2RY12Q9H244 342 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 DPH5Q9H2P9 285 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 C1GALT1Q9NS00 363 aa18.68■□□□□ 0.58
CLN3-260ENST00000637578 BTN3A1O00481 513 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 PRMT5O14744 637 aaPredicted RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 EBLN1P0CF75 366 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 TPBGLP0DKB5 382 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 MLNP12872 115 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 PRDX3P30048 256 aaKnown RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 ARCN1P48444 511 aaKnown RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 ITGA8P53708 1063 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 TUBB4BP68371 445 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 CYP4F2P78329 520 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 SLC7A5Q01650 507 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 PRKG2Q13237 762 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 TUBB3Q13509 450 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 MORF4L2Q15014 288 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 BRD3Q15059 726 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 C6orf15Q6UXA7 325 aaPredicted RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 RASGRP3Q8IV61 690 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 SLC22A15Q8IZD6 547 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 LRRN4CLQ8ND94 238 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 OR5AR1Q8NGP9 310 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 OR5K2Q8NHB8 316 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 HGH1Q9BTY7 390 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 EFHD1Q9BUP0 239 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 GPN2Q9H9Y4 310 aaPredicted RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 XAB2Q9HCS7 855 aaKnown RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 FGF21Q9NSA1 209 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms