RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LINGO1Q96FE5 620 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PGLYRP2Q96PD5 576 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TRIB3Q96RU7 358 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CGREF1Q99674 301 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 BRINP2Q9C0B6 783 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MAGIXQ9H6Y5 334 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RPF2Q9H7B2 306 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OSER1Q9NX31 292 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 DUS2Q9NX74 493 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GIN1Q9NXP7 522 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 DAPK2Q9UIK4 370 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHA9Q9Y5H5 950 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GPR45Q9Y5Y3 372 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 V9GYQ6 96 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SPTBN5Q9NRC6 3674 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HELZP42694 1942 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC163A0A0D9SF12 145 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 LOC285095A0A1B0GVY8 99 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TRIM64BA6NI03 449 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NCF1BA6NI72 391 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NCF1CA8MVU1 366 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 C5orf67F2Z3F1 127 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 H3BMQ9 156 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ARNTLO00327 626 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MYO1DO94832 1006 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CST1P01037 141 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 POMCP01189 267 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RHOCP08134 193 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NCF1P14598 390 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PORP16435 677 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HDCP19113 662 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 DGKAP23743 735 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SERPINB1P30740 379 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CD97P48960 835 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CLCN4P51793 760 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CSNK2BP67870 215 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RING1Q06587 406 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC10A7Q0GE19 358 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TRIM32Q13049 653 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GRB7Q14451 532 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TSNQ15631 228 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MAPKAPK3Q16644 382 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 TYSND1Q2T9J0 566 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RAP1GAP2Q684P5 730 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 METTL2BQ6P1Q9 378 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PIM3Q86V86 326 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HORMAD1Q86X24 394 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OFCC1Q8IZS5 231 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CDYL2Q8N8U2 506 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 KREMEN2Q8NCW0 462 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OR7A2PQ8NGA2 310 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 OR13J1Q8NGT2 312 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ANKRD49Q8WVL7 239 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PSMG2Q969U7 264 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HSPBAP1Q96EW2 488 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CDKN2AIPNLQ96HQ2 116 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 COG8Q96MW5 612 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GPR21Q99679 349 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ACTR8Q9H981 624 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GPN2Q9H9Y4 310 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HEBP1Q9NRV9 189 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NDFIP2Q9NV92 336 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 EBF1Q9UH73 591 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MUTYHQ9UIF7 546 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RPS6KA6Q9UK32 745 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ELOVL7A1L3X0 281 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SYN3O14994 580 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 AREL1O15033 823 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 HS6ST1O60243 411 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CLDN11O75508 207 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ARHGEF15O94989 841 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SIX3O95343 332 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ALDOCP09972 364 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MTHFD1P11586 935 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 BMPR1AP36894 532 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 BRCC3P46736 316 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CACNG1Q06432 222 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 VAC14Q08AM6 782 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 NFATC3Q12968 1075 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ATP1A4Q13733 1029 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SIM2Q14190 667 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 KRTAP21-3Q3LHN1 58 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CTXN3Q4LDR2 81 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MS4A13Q5J8X5 152 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ERICH5Q6P6B1 374 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 PAQR3Q6TCH7 311 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 CRTC3Q6UUV7 619 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ASCL5Q7RTU5 278 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 RETREG3Q86VR2 466 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 MIB1Q86YT6 1006 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 FUNDC1Q8IVP5 155 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 GPR65Q8IYL9 337 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SAMD14Q8IZD0 417 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 LGI2Q8N0V4 545 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ELMOD1Q8N336 334 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 ZCCHC7Q8N3Z6 543 aaKnown RBP3.91□□□□□ -1.78
SCN1A-214ENST00000637038 LPCAT1Q8NF37 534 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 FLCNQ8NFG4 579 aa3.91□□□□□ -1.78
SCN1A-214ENST00000637038 SLC13A3Q8WWT9 602 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms