RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DCUN1D5Q9BTE7 237 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 OSBPL10Q9BXB5 764 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TOR3AQ9H497 397 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 HPS4Q9NQG7 708 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 KLHL42Q9P2K6 505 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ADGRE2Q9UHX3 823 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 MAGED1Q9Y5V3 778 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CROCCQ5TZA2 2017 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 G3V2T6 193 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ALDH1A1P00352 501 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PCNAP12004 261 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 BPIP17213 487 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 CRHBPP24387 322 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GDF5P43026 501 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 HMGCS1Q01581 520 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 TBC1D25Q3MII6 688 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PLA2G4EQ3MJ16 856 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GPR33Q49SQ1 333 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SPANXN4Q5MJ08 99 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GPR149Q86SP6 731 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 CALHM3Q86XJ0 350 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 RGL4Q8IZJ4 473 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 CLDN19Q8N6F1 224 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PPP1R14BQ96C90 147 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SLC47A1Q96FL8 570 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 MBOAT4Q96T53 435 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 EGFL8Q99944 293 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 HTATIP2Q9BUP3 242 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 THUMPD3Q9BV44 507 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 MAGIXQ9H6Y5 334 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 NMRK2Q9NPI5 230 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FARSBQ9NSD9 589 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FAM118AQ9NWS6 357 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 KLQ9UEF7 1012 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF490Q9ULM2 529 aaPredicted RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FAF1Q9UNN5 650 aaPredicted RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 MAN2B2Q9Y2E5 1009 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 YIPF1Q9Y548 306 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 C1orf232A0A0U1RR37 186 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 A0A1W2PPW3 197 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FAM220BPB1ANY3 271 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 K7ERQ8 282 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 CXCR6O00574 342 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FFAR3O14843 346 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GPR42O15529 346 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ABCB7O75027 752 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SOCS5O75159 536 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 TRIM16O95361 564 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 MAPK8P45983 427 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PIK3CGP48736 1102 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GZMMP51124 257 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PLIN5Q00G26 463 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 PLD1Q13393 1074 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 BFSP2Q13515 415 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SKIV2LQ15477 1246 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 NEDD8Q15843 81 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 USP39Q53GS9 565 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 LHX8Q68G74 356 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 XAF1Q6GPH4 301 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SUSD1Q6UWL2 747 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 Q6ZNB5 142 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 CHST15Q7LFX5 561 aaPredicted RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 FAM217AQ8IXS0 508 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 MICU2Q8IYU8 434 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 C8orf59Q8N0T1 100 aaPredicted RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF461Q8TAF7 563 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 TBC1D15Q8TC07 691 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 WFDC5Q8TCV5 224 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 SDCCAG3Q96C92 435 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 APOL5Q9BWW9 433 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 NAA50Q9GZZ1 169 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ING2Q9H160 280 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 KAT8Q9H7Z6 458 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 ACTR8Q9H981 624 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 DCAF13Q9NV06 445 aaKnown RBP12.5□□□□□ -0.41
LINC00540-203ENST00000631321 C1orf109Q9NX04 203 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 LIMD1Q9UGP4 676 aa12.5□□□□□ -0.41
LINC00540-203ENST00000631321 GLYATL1P3A0A0U1RQE8 302 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 AGAP14A8MT82 685 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 LOC730098B7Z3J9 87 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TMX2-CTNND1H3BSU7 103 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CST1P01037 141 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 INHBBP09529 407 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CBSLP0DN79 551 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 EPB42P16452 691 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 GSTM2P28161 218 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CBSP35520 551 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 HNF1BP35680 557 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 PTPN5P54829 565 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 SMAD3P84022 425 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 BCL2L1Q07817 233 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CHRNA6Q15825 494 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 FGD3Q5JSP0 725 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 LRIF1Q5T3J3 769 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TPGS2Q68CL5 300 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TMEM150AQ86TG1 271 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 KRTCAP2Q8N6L1 136 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 FBXO30Q8TB52 745 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms