RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 AMBRA1Q9C0C7 1298 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 OSGEPL1Q9H4B0 414 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ALG2Q9H553 416 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RNF121Q9H920 327 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 HPF1Q9NWY4 346 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RDH8Q9NYR8 311 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 TRHDEQ9UKU6 1024 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RNF6Q9Y252 685 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 AUP1Q9Y679 476 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ANKRD31Q8N7Z5 1873 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 SMLR1H3BR10 107 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 CSF2P04141 144 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 KCNA5P22460 613 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 AZGP1P25311 298 aaKnown RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 ACVR2AP27037 513 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 MAGEA3P43357 314 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 AP1S2P56377 157 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 CLDN10P78369 228 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 FLI1Q01543 452 aaPredicted RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 GRK1Q15835 563 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 PSMD5Q16401 504 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 FUT11Q495W5 492 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ARHGAP36Q6ZRI8 547 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ADGRG3Q86Y34 549 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 MINDY1Q8N5J2 469 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RBPMSQ93062 196 aaKnown RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 SGK3Q96BR1 496 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ZNF845Q96IR2 970 aaPredicted RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 NSMCE2Q96MF7 247 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RPRD1AQ96P16 312 aaPredicted RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 KCNS3Q9BQ31 491 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 CNPY3Q9BT09 278 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 BRINP2Q9C0B6 783 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 TRIM45Q9H8W5 580 aaPredicted RBP7.78□□□□□ -1.16
VPS11-209ENST00000622309 ACOT13Q9NPJ3 140 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 DYRK4Q9NR20 520 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 KIF17Q9P2E2 1029 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ABCD2Q9UBJ2 740 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 RAB23Q9ULC3 237 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ACSL5Q9ULC5 683 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 USP22Q9UPT9 525 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 ANKRD6Q9Y2G4 727 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 FER1L6Q2WGJ9 1857 aa7.78□□□□□ -1.16
VPS11-209ENST00000622309 F5H423 210 aaPredicted RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 UBXN8O00124 270 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 BCKDKO14874 412 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TREHO43280 583 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 FAM20BO75063 409 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 ERN1O75460 977 aaKnown RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 LCKP06239 509 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 PGAM1P18669 254 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TPSB2P20231 275 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 GADD45AP24522 165 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 HLA-DMAP28067 261 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 CA5AP35218 305 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 MAGEA6P43360 314 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 RECQLP46063 649 aaPredicted RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 HOXA1P49639 335 aaPredicted RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 GSK3BP49841 420 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 PER3P56645 1201 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 BCAR1P56945 870 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 CHRNB3Q05901 458 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TPSAB1Q15661 275 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TAZQ16635 292 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 VPS26BQ4G0F5 336 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 FAM98BQ52LJ0 330 aaKnown RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 STEAP4Q687X5 459 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 LAIR2Q6ISS4 152 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 FSTL4Q6MZW2 842 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 PADI6Q6TGC4 694 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TEX261Q6UWH6 196 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 ZNF782Q6ZMW2 699 aaPredicted RBP7.77□□□□□ -1.16
VPS11-209ENST00000622309 GPALPP1Q8IXQ4 340 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 SETD9Q8NE22 299 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 DNAJB14Q8TBM8 379 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TEX47Q8TBZ9 253 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 CCNB1IP1Q9NPC3 277 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 REV1Q9UBZ9 1251 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 PGAP2Q9UHJ9 254 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 U3KQ87 197 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 NRXN2Q9P2S2 1712 aa7.77□□□□□ -1.16
VPS11-209ENST00000622309 TANC1Q9C0D5 1861 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 IGKV6D-41A0A0C4DH26 115 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 A0A0J9YYE9 177 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 TCRBV5S2A0A599 114 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 YDJCA8MPS7 323 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 DSCR3O14972 297 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 RFPL3O75679 317 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 METTL18O95568 372 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 ALPPP05187 535 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 MGAT1P26572 445 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 CAPZA2P47755 286 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 SNRPFP62306 86 aaKnown RBP7.77□□□□□ -1.17
VPS11-209ENST00000622309 RELQ04864 619 aaPredicted RBP7.77□□□□□ -1.17
VPS11-209ENST00000622309 KCNC3Q14003 757 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 RPS6KA2Q15349 733 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 DEFB115Q30KQ5 88 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 HSDL1Q3SXM5 330 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 ZNF691Q5VV52 312 aa7.77□□□□□ -1.17
VPS11-209ENST00000622309 LAMTOR1Q6IAA8 161 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms