RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 SLC22A14Q9Y267 594 aa12.15□□□□□ -0.46
CIITA-212ENST00000618207 HELZP42694 1942 aaKnown RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 PABPN1LA6NDY0 278 aaKnown RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 ATP1B2P14415 290 aaPredicted RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 GSK3BP49841 420 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 POLR2LP62875 67 aaKnown RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 LIPEQ05469 1076 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 PPIGQ13427 754 aaKnown RBP eCLIP12.15□□□□□ -0.47
CIITA-212ENST00000618207 TBCELQ5QJ74 424 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 LYPLAL1Q5VWZ2 237 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 OR52E8Q6IFG1 317 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 NANOGP8Q6NSW7 305 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 ISG20Q96AZ6 181 aaKnown RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 MCCC1Q96RQ3 725 aaPredicted RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 LYSMD1Q96S90 227 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 HOPXQ9BPY8 73 aaPredicted RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 KCTD14Q9BQ13 255 aaPredicted RBP12.15□□□□□ -0.47
CIITA-212ENST00000618207 ACTL8Q9H568 366 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 NANOGQ9H9S0 305 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 PFDN4Q9NQP4 134 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 PKD2L2Q9NZM6 624 aa12.15□□□□□ -0.47
CIITA-212ENST00000618207 NUMA1Q14980 2115 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 WASH3PC4AMC7 463 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 PDLIM1O00151 329 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 PGM3O95394 542 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 HIST1H2AGP0C0S8 130 aaPredicted RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 HIST1H2ADP20671 130 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 PREPP48147 710 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 LBX1P52954 281 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 DDX39BQ13838 428 aaKnown RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 SELPLGQ14242 412 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 ACOX1Q15067 660 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 DHCR24Q15392 516 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 CYP51A1Q16850 503 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 PTCHD3Q3KNS1 767 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 SULT1C3Q6IMI6 304 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 RGL4Q8IZJ4 473 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 OR2T34Q8NGX1 318 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 OR2T3Q8NH03 318 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 HIST1H2AHQ96KK5 128 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 HIST1H2AJQ99878 128 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 H2AFJQ9BTM1 129 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 CPEB1Q9BZB8 566 aaKnown RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 DUS2Q9NX74 493 aaKnown RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 UBAP1Q9NZ09 502 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 LEF1Q9UJU2 399 aaPredicted RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 IRAK3Q9Y616 596 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 FADS2P1A8MWK0 482 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 LIN7AO14910 233 aaPredicted RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 ARPC2O15144 300 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 LRATO95237 230 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 B3GALT4O96024 378 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 DGKGP49619 791 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 FAM174BQ3ZCQ3 159 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 HMBOX1Q6NT76 420 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 ADGRD2Q7Z7M1 963 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 LIX1Q8N485 282 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 MINDY1Q8N5J2 469 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 CDC26Q8NHZ8 85 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 TMEM125Q96AQ2 219 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 RSPRY1Q96DX4 576 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 ZNF641Q96N77 438 aaPredicted RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 NR1H4Q96RI1 486 aaPredicted RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 P2RY13Q9BPV8 354 aa12.14□□□□□ -0.47
CIITA-212ENST00000618207 TCF20Q9UGU0 1960 aaKnown RBP12.14□□□□□ -0.47
CIITA-212ENST00000618207 DOCK9Q9BZ29 2069 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 C15orf38-AP3S2A0A0A6YYH1 394 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 OTOL1A6NHN0 477 aaPredicted RBP12.13□□□□□ -0.47
CIITA-212ENST00000618207 XYLBO75191 536 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 TIMP2P16035 220 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 MSH3P20585 1137 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 SLC6A11P48066 632 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 PSMD8P48556 350 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 CTSCP53634 463 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 HACD2Q6Y1H2 254 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 ARPINQ7Z6K5 226 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 FRS2Q8WU20 508 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 SELENOMQ8WWX9 145 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 BRINP2Q9C0B6 783 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 ZDHHC7Q9NXF8 308 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 TBC1D14Q9P2M4 693 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 PRUNE2Q8WUY3 3088 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 TCRBV3S1A0A5B6 114 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 DHRS12A0PJE2 317 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 C7orf72A4D263 438 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 AGAP14A8MT82 685 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 CYP17A1P05093 508 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 C8BP07358 591 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 ATP6V1B1P15313 513 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 AOAHP28039 575 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 HALP42357 657 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 OR4D2P58180 307 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 TRAP1Q12931 704 aaKnown RBP12.13□□□□□ -0.47
CIITA-212ENST00000618207 SF1Q15637 639 aaKnown RBP12.13□□□□□ -0.47
CIITA-212ENST00000618207 ANKRD46Q86W74 232 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 GPR65Q8IYL9 337 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 AHI1Q8N157 1196 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 C17orf50Q8WW18 174 aa12.13□□□□□ -0.47
CIITA-212ENST00000618207 SMG7Q92540 1137 aaKnown RBP12.13□□□□□ -0.47
CIITA-212ENST00000618207 NXPE3Q969Y0 559 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms