RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 VNN3Q9NY84 501 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ELOVL7A1L3X0 281 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SMIM30A4D0T7 59 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 A8MUA0 341 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 RGS10O43665 173 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 MATN4O95460 622 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 CTSHP09668 335 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 CCDC159P0C7I6 412 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ADRA1AP35348 466 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 GRIK1P39086 918 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 BRCC3P46736 316 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ZNF135P52742 658 aaPredicted RBP12.93□□□□□ -0.34
MSH6-214ENST00000616033 ERVK-8P63133 956 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 RAD51Q06609 339 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ARHGAP1Q07960 439 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 KYAT1Q16773 422 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ZRANB3Q5FWF4 1079 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ZNF648Q5T619 568 aaPredicted RBP12.93□□□□□ -0.34
MSH6-214ENST00000616033 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.93□□□□□ -0.34
MSH6-214ENST00000616033 GRAMD2AQ8IUY3 354 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 P3H2Q8IVL5 708 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 EEF1AKMT1Q8WVE0 214 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SYT17Q9BSW7 474 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 HOXD1Q9GZZ0 328 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 RUBCNLQ9H714 662 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 PDP1Q9P0J1 537 aaPredicted RBP12.93□□□□□ -0.34
MSH6-214ENST00000616033 CDH9Q9ULB4 789 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SATB2Q9UPW6 733 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 IFT52Q9Y366 437 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 TPRKBQ9Y3C4 175 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SCAMP3O14828 347 aaKnown RBP12.93□□□□□ -0.34
MSH6-214ENST00000616033 TBX18O95935 607 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 GADD45AP24522 165 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SLC26A2P50443 739 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 PPP5CP53041 499 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 MVKQ03426 396 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 PON2Q15165 354 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ZBTB6Q15916 424 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 TPRG1LQ5T0D9 272 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 SMYD5Q6GMV2 418 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 LETMD1Q6P1Q0 360 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 CEP68Q76N32 757 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 BEND5Q7L4P6 421 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ADHFE1Q8IWW8 467 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 PIK3C3Q8NEB9 887 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 RHOXF1Q8NHV9 184 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 UPF1Q92900 1129 aaKnown RBP eCLIP12.93□□□□□ -0.34
MSH6-214ENST00000616033 LINGO1Q96FE5 620 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 ATOH8Q96SQ7 321 aa12.93□□□□□ -0.34
MSH6-214ENST00000616033 FAM234BA2RU67 622 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 NUAK1O60285 661 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 SEC22BO75396 215 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 PAPSS2O95340 614 aaPredicted RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 C7P10643 843 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ATF4P18848 351 aaPredicted RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 PCMT1P22061 227 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ERVPABLB-1P60509 514 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ALFQ53S48 1182 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 PRAMEF19Q5SWL8 479 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 Q6ZSR9 355 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 NECAB2Q7Z6G3 386 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 PTRH1Q86Y79 214 aaKnown RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 FAM217AQ8IXS0 508 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 C10orf111Q8N326 155 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 OR4K2Q8NGD2 314 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 OR4L1Q8NH43 312 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 CCDC120Q96HB5 630 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 SLC9A7Q96T83 725 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ZBTB18Q99592 522 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 KAT8Q9H7Z6 458 aaKnown RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 TAS2R13Q9NYV9 303 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 EHD3Q9NZN3 535 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 PHIPQ8WWQ0 1821 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 E9PAM4 449 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 TSC22D2O75157 780 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 UPK1BO75841 260 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 STAU1O95793 577 aaKnown RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 CASP3P42574 277 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ABRAXAS2Q15018 415 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 DLEU7Q6UYE1 221 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 VTCN1Q7Z7D3 282 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 GPSM1Q86YR5 675 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 CFAP52Q8N1V2 620 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 CDCA5Q96FF9 252 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ZNF641Q96N77 438 aaPredicted RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 ZNF717Q9BY31 904 aaPredicted RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 DPY30Q9C005 99 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 NUAK2Q9H093 628 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 ADARB2Q9NS39 739 aaKnown RBP12.92□□□□□ -0.34
MSH6-214ENST00000616033 SLC6A13Q9NSD5 602 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 PKP3Q9Y446 797 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 IPPQ9Y573 584 aa12.92□□□□□ -0.34
MSH6-214ENST00000616033 POLR2AP24928 1970 aaKnown RBP12.91□□□□□ -0.34
MSH6-214ENST00000616033 NINQ8N4C6 2090 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 B3GAT3O94766 335 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 GABARAPO95166 117 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 POMCP01189 267 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 APOA1P02647 267 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 GLULP15104 373 aa12.91□□□□□ -0.34
MSH6-214ENST00000616033 GGT1P19440 569 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms