RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-218	ENST00000598907	LPCAT1	Q8NF37	534 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SCRN2	Q96FV2	425 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PWWP2A	Q96N64	755 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TGM7	Q96PF1	710 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	GPR83	Q9NYM4	423 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	NFU1	Q9UMS0	254 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	NTNG1	Q9Y2I2	539 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TMEM98	Q9Y2Y6	226 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	COPG1	Q9Y678	874 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MN1	Q10571	1320 aa	Predicted RBP	13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TACC2	O95359	2948 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	EIF3H	O15372	352 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	CEACAM4	O75871	244 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	RASSF9	O75901	435 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MT-ND3	P03897	115 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	IVL	P07476	585 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TPH1	P17752	444 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PTPN4	P29074	926 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	ARL4C	P56559	192 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	HIF1A	Q16665	826 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	DPPA4	Q7L190	304 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	RELL1	Q8IUW5	271 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PDIK1L	Q8N165	341 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	DNAAF3	Q8N9W5	541 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	C9orf72	Q96LT7	481 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SMIM14	Q96QK8	99 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MAGEE1	Q9HCI5	957 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PIH1D1	Q9NWS0	290 aa	Known RBP	13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	COPG2	Q9UBF2	871 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SLC17A4	Q9Y2C5	497 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SPO11	Q9Y5K1	396 aa		13.58	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SDR42E2	A6NKP2	422 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	NADK	O95544	446 aa	Predicted RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	HOXB4	P17483	251 aa	Predicted RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TYRP1	P17643	537 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PSMA3	P25788	255 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MGAT1	P26572	445 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	ETV3	P41162	512 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TNNT3	P45378	269 aa	Predicted RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	EPHB1	P54762	984 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	EPHA4	P54764	986 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	RPS15	P62841	145 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	DHX9	Q08211	1270 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	IL11RA	Q14626	422 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PTPRR	Q15256	657 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TESK1	Q15569	626 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	FJX1	Q86VR8	437 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PPP1R3B	Q86XI6	285 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	HPS6	Q86YV9	775 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PLXDC1	Q8IUK5	500 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	NDUFAF2	Q8N183	169 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	CBARP	Q8N350	705 aa	Predicted RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	LRRC39	Q96DD0	335 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SRPK1	Q96SB4	655 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	FMO2	Q99518	471 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	WDR83	Q9BRX9	315 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	IL22	Q9GZX6	179 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TSPYL1	Q9H0U9	437 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SARS2	Q9NP81	518 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	BFAR	Q9NZS9	450 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	HACD3	Q9P035	362 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	B4GALT6	Q9UBX8	382 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MTRF1L	Q9UGC7	380 aa	Known RBP	13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	B3GNT3	Q9Y2A9	372 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PRKAB1	Q9Y478	270 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TEX264	Q9Y6I9	313 aa		13.57	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MROH6	A6NGR9	719 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	LDB2	O43679	373 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SNX2	O60749	519 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	FAM153B	P0C7A2	387 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	CTPS1	P17812	591 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	ADRA1D	P25100	572 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	ITGA3	P26006	1051 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PTGER4	P35408	488 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SESN2	P58004	480 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	CNGA3	Q16281	694 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	FAM153C	Q494X1	144 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	DNAJC21	Q5F1R6	531 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	PCID2	Q5JVF3	399 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	FAM69B	Q5VUD6	431 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SPNS3	Q6ZMD2	512 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	USP45	Q70EL2	814 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	CENPU	Q71F23	418 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	GALNT13	Q8IUC8	556 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MPP5	Q8N3R9	675 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TTC30B	Q8N4P2	665 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	ST6GALNAC3	Q8NDV1	305 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	BRSK1	Q8TDC3	778 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	AEN	Q8WTP8	325 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	INPP5D	Q92835	1189 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SH3KBP1	Q96B97	665 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	COQ10A	Q96MF6	247 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	C19orf43	Q9BQ61	176 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	KIFC1	Q9BW19	673 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	GPR87	Q9BY21	358 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TXLNGY	Q9BZA5	131 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	TRABD	Q9H4I3	376 aa		13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	MRM3	Q9HC36	420 aa	Known RBP	13.56	□□□□□ -0.24
SHKBP1-218	ENST00000598907	SYBU	Q9NX95	663 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms