RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 IFT81Q8WYA0 676 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 GRAMD1AQ96CP6 724 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 CMKLR1Q99788 373 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 DPYSL5Q9BPU6 564 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 WDR83Q9BRX9 315 aaKnown RBP10.8□□□□□ -0.68
LIG1-211ENST00000596457 TRIT1Q9H3H1 467 aaKnown RBP10.8□□□□□ -0.68
LIG1-211ENST00000596457 XKR8Q9H6D3 395 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 POLR1BQ9H9Y6 1135 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 CIDEBQ9UHD4 219 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 SLC24A2Q9UI40 661 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 PLAGL1Q9UM63 463 aa10.8□□□□□ -0.68
LIG1-211ENST00000596457 A0A1W2PNU3 283 aaPredicted RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 EFCAB7A8K855 629 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 H3BMM5 538 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 PLD2O14939 933 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 KPNA5O15131 536 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 TNFSF15O95150 251 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 CSTF2P33240 577 aaKnown RBP eCLIP10.79□□□□□ -0.68
LIG1-211ENST00000596457 LSSP48449 732 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 PPP1CAP62136 330 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 SQSTM1Q13501 440 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 CLPPQ16740 277 aaPredicted RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 CACHD1Q5VU97 1274 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 ZNF549Q6P9A3 640 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 KLHL35Q6PF15 583 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 WDR74Q6RFH5 385 aaPredicted RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 ZDHHC24Q6UX98 284 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 OOSP2Q86WS3 158 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 FAM129CQ86XR2 697 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 SLC22A15Q8IZD6 547 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 ZBTB2Q8N680 514 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 SIDT2Q8NBJ9 832 aaKnown RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 C2CD4AQ8NCU7 369 aaPredicted RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 ACVR1CQ8NER5 493 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 OR52E1Q8NGJ3 308 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 LIN37Q96GY3 246 aaPredicted RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 C9orf72Q96LT7 481 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 DCBLD2Q96PD2 775 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 NDNQ99608 321 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 SRMSQ9H3Y6 488 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 EPB41L1Q9H4G0 881 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 KIR3DX1Q9H7L2 352 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 MVB12BQ9H7P6 319 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 HRASLS2Q9NWW9 162 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 DMGDHQ9UI17 866 aaKnown RBP10.79□□□□□ -0.68
LIG1-211ENST00000596457 WDFY3Q8IZQ1 3526 aa10.79□□□□□ -0.68
LIG1-211ENST00000596457 ADAMTS20P59510 1910 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 GSAPA4D1B5 854 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 E7ESA3 106 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 EIF3HO15372 352 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIG1-211ENST00000596457 KIF1CO43896 1103 aaKnown RBP10.78□□□□□ -0.68
LIG1-211ENST00000596457 GPC4O75487 556 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 AHSGP02765 367 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 THRAP10827 490 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 CCL4P13236 92 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 SAT1P21673 171 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 ACADLP28330 430 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 SSTR1P30872 391 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 ETV5P41161 510 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 CAPZBP47756 277 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 MGAT5Q09328 741 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 PRKAA1Q13131 559 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 TRA2AQ13595 282 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIG1-211ENST00000596457 CUL1Q13616 776 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 PLEKHS1Q5SXH7 462 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 TEDDM1Q5T9Z0 273 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 STEAP4Q687X5 459 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 TBC1D21Q8IYX1 336 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 LSMEM2Q8N112 164 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 GPATCH11Q8N954 259 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 ZFPM2Q8WW38 1151 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 ZDHHC12Q96GR4 267 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 PRR11Q96HE9 360 aaPredicted RBP10.78□□□□□ -0.68
LIG1-211ENST00000596457 NAF1Q96HR8 494 aaKnown RBP10.78□□□□□ -0.68
LIG1-211ENST00000596457 FOPNLQ96NB1 174 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 GPR21Q99679 349 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 SLC30A3Q99726 388 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 AARSD1Q9BTE6 412 aaKnown RBP10.78□□□□□ -0.68
LIG1-211ENST00000596457 PLAC1Q9HBJ0 212 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 FAM114A2Q9NRY5 505 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 OCIAD1Q9NX40 245 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 ZFATQ9P243 1243 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 POLG2Q9UHN1 485 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 RUVBL2Q9Y230 463 aaKnown RBP10.78□□□□□ -0.68
LIG1-211ENST00000596457 CDYLQ9Y232 598 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 NFS1Q9Y697 457 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 TENM4Q6N022 2769 aa10.78□□□□□ -0.68
LIG1-211ENST00000596457 OR5K3A6NET4 321 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 EIF4E1BA6NMX2 242 aaKnown RBP10.77□□□□□ -0.69
LIG1-211ENST00000596457 VPS26AO75436 327 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 PIAS1O75925 651 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 SLCO2B1O94956 709 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 RHOXF2BP0C7M4 288 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 GABRB3P28472 473 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 MAGEA4P43358 317 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 BDKRB1P46663 353 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 ARL4DP49703 201 aa10.77□□□□□ -0.69
LIG1-211ENST00000596457 ADARP55265 1226 aaKnown RBP10.77□□□□□ -0.69
LIG1-211ENST00000596457 EIF3IQ13347 325 aaKnown RBP10.77□□□□□ -0.69
LIG1-211ENST00000596457 KLHL38Q2WGJ6 581 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms