RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, human

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIG1-208	ENST00000595758	ILF2	Q12905	390 aa	Known RBP	13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	SLMAP	Q14BN4	828 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	KBTBD12	Q3ZCT8	623 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	PHF19	Q5T6S3	580 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	HECTD2	Q5U5R9	776 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	PLXDC1	Q8IUK5	500 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	SLITRK4	Q8IW52	837 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	OR4E2	Q8NGC2	313 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	OR5K2	Q8NHB8	316 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	CD200R1	Q8TD46	325 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	RSC1A1	Q92681	617 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	FOPNL	Q96NB1	174 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	CPNE1	Q99829	537 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	STRADB	Q9C0K7	418 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	CDC42EP4	Q9H3Q1	356 aa	Known RBP	13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	SRMS	Q9H3Y6	488 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	RHOJ	Q9H4E5	214 aa		13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	TFB2M	Q9H5Q4	396 aa	Known RBP	13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	TSR3	Q9UJK0	312 aa	Known RBP	13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	TDRKH	Q9Y2W6	561 aa	Known RBP	13.97	□□□□□ -0.17
LIG1-208	ENST00000595758	IGHV5-10-1	A0A0J9YXX1	117 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	OR6C74	A6NCV1	312 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CAPN5	O15484	640 aa	Predicted RBP	13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	KDM1A	O60341	852 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	C1QA	P02745	245 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CBSL	P0DN79	551 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	ENO3	P13929	434 aa	Predicted RBP	13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CD9	P21926	228 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	MCM3	P25205	808 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CCKBR	P32239	447 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CBS	P35520	551 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CAPZB	P47756	277 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	LIMK2	P53671	638 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CAMK2B	Q13554	666 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	KLHL38	Q2WGJ6	581 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	SNAP47	Q5SQN1	464 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	FAM45BP	Q6NSW5	357 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	ARMC6	Q6NXE6	501 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	TTC23L	Q6PF05	361 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	NEK10	Q6ZWH5	1172 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	DCUN1D3	Q8IWE4	304 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CPNE9	Q8IYJ1	553 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	PPM1N	Q8N819	430 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	EIF1AD	Q8N9N8	165 aa	Known RBP	13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	OR52E1	Q8NGJ3	308 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	FAM45A	Q8TCE6	357 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	ZDHHC12	Q96GR4	267 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	ELMO2	Q96JJ3	720 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	CCDC74B	Q96LY2	380 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	HRASLS2	Q9NWW9	162 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	TMEM9	Q9P0T7	183 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	PDP2	Q9P2J9	529 aa		13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	RUVBL2	Q9Y230	463 aa	Known RBP	13.96	□□□□□ -0.17
LIG1-208	ENST00000595758	FAM95C	A0A1B0GW59	222 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	OR5K3	A6NET4	321 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	TRABD2B	A6NFA1	517 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	EIF3F	O00303	357 aa	Predicted RBP	13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	MATN4	O95460	622 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	ACSL3	O95573	720 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	THRA	P10827	490 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	SAT1	P21673	171 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	FDXR	P22570	491 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	GP5	P40197	560 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	GFER	P55789	205 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	PDAP1	Q13442	181 aa	Known RBP	13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	NAB1	Q13506	487 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	TRA2A	Q13595	282 aa	Known RBP eCLIP	13.95	□□□□□ -0.18	2e-6	■□□□□ 8.8
LIG1-208	ENST00000595758	GRTP1	Q5TC63	336 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	IRGC	Q6NXR0	463 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	PAQR3	Q6TCH7	311 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	AMIGO1	Q86WK6	493 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	OOSP2	Q86WS3	158 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	SPNS2	Q8IVW8	549 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	LIN37	Q96GY3	246 aa	Predicted RBP	13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	VPS39	Q96JC1	886 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	TGM7	Q96PF1	710 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	CYTH2	Q99418	400 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	OLFM1	Q99784	485 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	MCMBP	Q9BTE3	642 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	RAB33B	Q9H082	229 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	XKR8	Q9H6D3	395 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	EPHA6	Q9UF33	1036 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	KLHL3	Q9UH77	587 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	NFS1	Q9Y697	457 aa		13.95	□□□□□ -0.18
LIG1-208	ENST00000595758	MN1	Q10571	1320 aa	Predicted RBP	13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	CCDC187	A0A096LP49	1063 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758		A8MU76	341 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	C1orf105	O95561	183 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	C9	P02748	559 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	FAM153B	P0C7A2	387 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	TPBGL	P0DKB5	382 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	MPC1L	P0DKB6	136 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	POLR2C	P19387	275 aa	Predicted RBP	13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	SHMT2	P34897	504 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	CCNF	P41002	786 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	RGS4	P49798	205 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	TAS2R39	P59534	338 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	PRKAA1	Q13131	559 aa		13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	EFTUD2	Q15029	972 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
LIG1-208	ENST00000595758	FAM153C	Q494X1	144 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms