RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NSG1P42857 185 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 RPA4Q13156 261 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 LAMB3Q13751 1172 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 BOP1Q14137 746 aaKnown RBP19.86■□□□□ 0.77
SHMT1-209ENST00000582653 RPS6KA1Q15418 735 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 MEI1Q5TIA1 1274 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 IZUMO3Q5VZ72 239 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 ZNF449Q6P9G9 518 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 ASB18Q6ZVZ8 466 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 TMEM126BQ8IUX1 230 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 FRMD8P1Q9BZ68 369 aaPredicted RBP19.86■□□□□ 0.77
SHMT1-209ENST00000582653 KLHL25Q9H0H3 589 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 MVB12BQ9H7P6 319 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 ERI2A8K979 691 aaKnown RBP19.85■□□□□ 0.77
SHMT1-209ENST00000582653 CYSRT1A8MQ03 144 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GOLGA6L6A8MZA4 724 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 OR1I1O60431 355 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GAS8O95995 478 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GOT2P00505 430 aaKnown RBP19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GSTM1P09488 218 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 MSL3P1P0C860 447 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 FDFT1P37268 417 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GSDMDP57764 484 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GSTM4Q03013 218 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 GPS2Q13227 327 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 UBAP2LQ14157 1087 aaKnown RBP19.85■□□□□ 0.77
SHMT1-209ENST00000582653 ITIH4Q14624 930 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 TSTD2Q5T7W7 516 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 AMIGO1Q86WK6 493 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 OR5AR1Q8NGP9 310 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 ELMO1Q92556 727 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 MR1Q95460 341 aa19.85■□□□□ 0.77
SHMT1-209ENST00000582653 HEATR9A2RTY3 570 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 MEN1O00255 615 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 PVRP15151 417 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 ST6GAL1P15907 406 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 NR1D1P20393 614 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 ADRA1DP25100 572 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 RPS18P62269 152 aaKnown RBP19.84■□□□□ 0.77
SHMT1-209ENST00000582653 SIX1Q15475 284 aaPredicted RBP19.84■□□□□ 0.77
SHMT1-209ENST00000582653 KCTD19Q17RG1 926 aaPredicted RBP19.84■□□□□ 0.77
SHMT1-209ENST00000582653 PLEKHS1Q5SXH7 462 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 ADGRF3Q8IZF5 1079 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 CPT1BQ92523 772 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 FANCEQ9HB96 536 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 LZTFL1Q9NQ48 299 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 CASS4Q9NQ75 786 aa19.84■□□□□ 0.77
SHMT1-209ENST00000582653 SPENQ96T58 3664 aaKnown RBP19.83■□□□□ 0.77
SHMT1-209ENST00000582653 BHMG1C9JSJ3 638 aaPredicted RBP19.83■□□□□ 0.77
SHMT1-209ENST00000582653 LIN7AO14910 233 aaPredicted RBP19.83■□□□□ 0.77
SHMT1-209ENST00000582653 MAP3K7O43318 606 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 APRTP07741 180 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 RAB40ALP0C0E4 278 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ACADLP28330 430 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 RPL22P35268 128 aaKnown RBP19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ABRQ12979 859 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 SEMA3AQ14563 771 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 PACS1Q6VY07 963 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ZNF534Q76KX8 674 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 DSELQ8IZU8 1212 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 CCDC89Q8N998 374 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 OR6P1Q8NGX9 317 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 TRAPPC9Q96Q05 1148 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 RANBP9Q96S59 729 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 TRIM55Q9BYV6 548 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 CHST8Q9H2A9 424 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ACTR10Q9NZ32 417 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 SERTAD3Q9UJW9 196 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ICKQ9UPZ9 632 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 ASF1AQ9Y294 204 aa19.83■□□□□ 0.77
SHMT1-209ENST00000582653 COL12A1Q99715 3063 aa19.83■□□□□ 0.76
SHMT1-209ENST00000582653 SLC5A10A0PJK1 596 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 C2orf74A8MZ97 194 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 FTH1P02794 183 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 OR56A5P0C7T3 313 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 TPBGLP0DKB5 382 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 CSE1LP55060 971 aaKnown RBP19.82■□□□□ 0.76
SHMT1-209ENST00000582653 LCN10Q6JVE6 187 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 AFTPHQ6ULP2 937 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 OR4L1Q8NH43 312 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 OR1L3Q8NH93 324 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 MIB2Q96AX9 1013 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 NLNQ9BYT8 704 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 PITPNM3Q9BZ71 974 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 MLXIPLQ9NP71 852 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 PAK5Q9P286 719 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 TDRKHQ9Y2W6 561 aaKnown RBP19.82■□□□□ 0.76
SHMT1-209ENST00000582653 TCAF1Q9Y4C2 921 aa19.82■□□□□ 0.76
SHMT1-209ENST00000582653 CLEC18AA5D8T8 446 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 TMEM150CB9EJG8 249 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 QSOX1O00391 747 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 DNAJB5O75953 348 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 RORAP35398 523 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CD97P48960 835 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 ACVR1Q04771 509 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 SRSF1Q07955 248 aaKnown RBP eCLIP19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CCNG2Q16589 344 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 ZNF789Q5FWF6 425 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 LYPLAL1Q5VWZ2 237 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CLEC18BQ6UXF7 455 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 191.4 ms