RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TGDSO95455 350 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 CLDN7O95471 211 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 PRAMEF1O95521 474 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 ESR1P03372 595 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 SERPINE1P05121 402 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 RALBP11234 206 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 ZNF30P17039 623 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 FMO4P31512 558 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 RABIFP47224 123 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 RPIAP49247 311 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 SUOXP51687 545 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 RPS21P63220 83 aaKnown RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 IRF9Q00978 393 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 SRSF6Q13247 344 aaKnown RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 SPIDRQ14159 915 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 ACAP2Q15057 778 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 TCEA2Q15560 299 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 TGIF1Q15583 401 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 LINC00303Q3SY05 128 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 ZNF805Q5CZA5 627 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 COLEC12Q5KU26 742 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 IGF2-ASQ6U949 168 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 SNX20Q7Z614 316 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 LDB1Q86U70 411 aaPredicted RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 PARGQ86W56 976 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 RBFAQ8N0V3 343 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 FBXO39Q8N4B4 442 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 NKAPQ8N5F7 415 aaKnown RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 GBP7Q8N8V2 638 aaPredicted RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 ZNF398Q8TD17 642 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 KCTD4Q8WVF5 259 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 ULK4Q96C45 1275 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 C7orf26Q96N11 449 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 MCCC1Q96RQ3 725 aaPredicted RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 SIKE1Q9BRV8 207 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 CLPBQ9H078 707 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 CDH19Q9H159 772 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 MRPL46Q9H2W6 279 aaKnown RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 TCEAL2Q9H3H9 227 aaPredicted RBP9.99□□□□□ -0.81
SS18-210ENST00000578700 ASB8Q9H765 288 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 THAP1Q9NVV9 213 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 DKK3Q9UBP4 350 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 CRLS1Q9UJA2 301 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 DOLKQ9UPQ8 538 aa9.99□□□□□ -0.81
SS18-210ENST00000578700 CCDC187A0A096LP49 1063 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 RGSL1A5PLK6 1076 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 IGLON5A6NGN9 336 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 TMEM114B3SHH9 223 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 NEMP1O14524 444 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 SPINT1O43278 529 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 LZTS3O60299 673 aaPredicted RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 SMIM24O75264 130 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 DCTN3O75935 186 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 SNUPNO95149 360 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 HSPA4LO95757 839 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 ANXA6P08133 673 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 F7P08709 466 aaPredicted RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 CCDC166P0CW27 439 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 PKMP14618 531 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 NME1P15531 152 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 CHRM3P20309 590 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 FDXRP22570 491 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 SLC5A2P31639 672 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 VIPR1P32241 457 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 GLRBP48167 497 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 ADARP55265 1226 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 ATP6V0D1P61421 351 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 IFT88Q13099 833 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 EIF2B5Q13144 721 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 ITGA9Q13797 1035 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 CSHL1Q14406 222 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 PRRT3Q5FWE3 981 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 TPRG1LQ5T0D9 272 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 RBM20Q5T481 1227 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 PTRHD1Q6GMV3 140 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 LRRC8EQ6NSJ5 796 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 FAM151BQ6UXP7 276 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 ZYG11AQ6WRX3 759 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 ATG14Q6ZNE5 492 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 OTOAQ7RTW8 1153 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 TTC7BQ86TV6 843 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 CEP97Q8IW35 865 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 WDR75Q8IWA0 830 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 ACVR1CQ8NER5 493 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 FAM174AQ8TBP5 190 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 LPGAT1Q92604 370 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 PLEKHG4BQ96PX9 1271 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 CCDC3Q9BQI4 270 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 AARSD1Q9BTE6 412 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 MECRQ9BV79 373 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 HDAC8Q9BY41 377 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 NPHS2Q9NP85 383 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 NCKIPSDQ9NZQ3 722 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 CPSF2Q9P2I0 782 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 SPASTQ9UBP0 616 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 TRMT6Q9UJA5 497 aaKnown RBP9.98□□□□□ -0.81
SS18-210ENST00000578700 GNPTGQ9UJJ9 305 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 EMCNQ9ULC0 261 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 FADS3Q9Y5Q0 445 aa9.98□□□□□ -0.81
SS18-210ENST00000578700 CSNK1G3Q9Y6M4 447 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms