RNA–Protein interactions for RNA: ENST00000574344.5

NPLOC4-216, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 4

Gene NPLOC4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-216ENST00000574344 IFNB1P01574 187 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 CCNYL3P0C7X3 344 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 EBLN1P0CF75 366 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 SPTBP11277 2137 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ZNF28P17035 718 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 NELFEP18615 380 aaKnown RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ACRV1P26436 265 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 NDUFS1P28331 727 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 CCR10P46092 362 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ARCN1P48444 511 aaKnown RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 POLE2P56282 527 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 NFKB2Q00653 900 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ACY1Q03154 408 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 DHX9Q08211 1270 aaKnown RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 PRKAA1Q13131 559 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 KLF1Q13351 362 aaPredicted RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 MAP7Q14244 749 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 KCNAB1Q14722 419 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 CCNG2Q16589 344 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 GPR33Q49SQ1 333 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 DUPD1Q68J44 220 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 DENND5AQ6IQ26 1287 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 PPP1R21Q6ZMI0 780 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 LINC00523Q86TU6 105 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 SERPINA9Q86WD7 417 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 LILRA3Q8N6C8 439 aaPredicted RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ARFGAP2Q8N6H7 521 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 STYXQ8WUJ0 223 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ATG4AQ8WYN0 398 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 KLHL6Q8WZ60 621 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 SH3GL2Q99962 352 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 CCM2Q9BSQ5 444 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 RAB33BQ9H082 229 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 SLC25A18Q9H1K4 315 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 KIR3DX1Q9H7L2 352 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 COG4Q9H9E3 785 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ARNT2Q9HBZ2 717 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 NLE1Q9NVX2 485 aaPredicted RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 ZDHHC3Q9NYG2 299 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 PSD3Q9NYI0 1048 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 IL17BQ9UHF5 180 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 SLC24A2Q9UI40 661 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 CROTQ9UKG9 612 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 PCDHB3Q9Y5E6 796 aa9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 TLN1Q9Y490 2541 aaKnown RBP9.42□□□□□ -0.9
NPLOC4-216ENST00000574344 TCRBV7S2A1N4TA0A589 114 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 AGAP14A8MT82 685 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 BHMG1C9JSJ3 638 aaPredicted RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 MT-ND3P03897 115 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 PRSS56P0CW18 603 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 FGF5P12034 268 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 POLR2CP19387 275 aaPredicted RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CDH3P22223 829 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 ECHS1P30084 290 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 HSD17B3P37058 310 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 PTGIRP43119 386 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CDKN1CP49918 316 aaPredicted RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 PMS2P54278 862 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 PLTPP55058 493 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CACNG1Q06432 222 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 KCNAB2Q13303 367 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 DEFB109BQ30KR1 87 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SYTL3Q4VX76 610 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CCDC38Q502W7 563 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CEP85LQ5SZL2 805 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 TMTC4Q5T4D3 741 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 ATP1A1-AS1Q5TC04 95 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 KCTD11Q693B1 232 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 MICALCLQ6ZW33 695 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 OR52K1Q8NGK4 314 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SLC35B2Q8TB61 432 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 ZFPM2Q8WW38 1151 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 C1orf54Q8WWF1 131 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 LCN9Q8WX39 176 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 LINC00615Q96LM1 132 aaPredicted RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 FERD3LQ96RJ6 166 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CD180Q99467 661 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 C19orf43Q9BQ61 176 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SPRY4Q9C004 299 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 TRIM4Q9C037 500 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 ADNPQ9H2P0 1102 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SRMSQ9H3Y6 488 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 FANCEQ9HB96 536 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 STARD5Q9NSY2 213 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 GEMIN8Q9NWZ8 242 aaKnown RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 ZNF148Q9UQR1 794 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SNX24Q9Y343 169 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 SPTA1P02549 2419 aa9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 TNRC6AQ8NDV7 1962 aaKnown RBP9.41□□□□□ -0.9
NPLOC4-216ENST00000574344 CCDC88CQ9P219 2028 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 C17orf113A0A1B0GUU1 675 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 OR51F1A6NGY5 319 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 H7C0S8 307 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 SGTAO43765 313 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 ZBTB11O95625 1053 aaPredicted RBP9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 SYF2O95926 243 aaKnown RBP9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 FAM153BP0C7A2 387 aa9.4□□□□□ -0.9
NPLOC4-216ENST00000574344 FOLR1P15328 257 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms