RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 KCND1Q9NSA2 647 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 LNPEPQ9UIQ6 1025 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 NEU2Q9Y3R4 380 aa14.42□□□□□ -0.1
CLN3-213ENST00000565047 C21orf140B9A014 251 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 E7EVH7 732 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 J3QKU1 62 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 MT-ND3P03897 115 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 OR56A5P0C7T3 313 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 TCN2P20062 427 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 RORAP35398 523 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 MAGEA6P43360 314 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 GABRA4P48169 554 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 LMAN1P49257 510 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 CRADDP78560 199 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 NFKB2Q00653 900 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 MC1RQ01726 317 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 PLOD1Q02809 727 aaPredicted RBP14.41□□□□□ -0.1
CLN3-213ENST00000565047 KCNAB2Q13303 367 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 DNASE1L3Q13609 305 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 GRB7Q14451 532 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 ZIC1Q15915 447 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 PLEKHS1Q5SXH7 462 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 LCN10Q6JVE6 187 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 TTC27Q6P3X3 843 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 FAM199XQ6PEV8 388 aaPredicted RBP14.41□□□□□ -0.1
CLN3-213ENST00000565047 UNC5AQ6ZN44 842 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 LDB1Q86U70 411 aaPredicted RBP14.41□□□□□ -0.1
CLN3-213ENST00000565047 TBC1D21Q8IYX1 336 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 RASGEF1CQ8N431 466 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 OR5K2Q8NHB8 316 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 OR2A14Q96R47 310 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 HGH1Q9BTY7 390 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 KIFC1Q9BW19 673 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 CARD6Q9BX69 1037 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 AP1M1Q9BXS5 423 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 P2RY12Q9H244 342 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 ACTR10Q9NZ32 417 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 KCNMB2Q9Y691 235 aa14.41□□□□□ -0.1
CLN3-213ENST00000565047 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.4□□□□□ -0.1
CLN3-213ENST00000565047 IQCF5A8MTL0 148 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 HCRTR1O43613 425 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 CEP104O60308 925 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 GAS8O95995 478 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 CCNYL3P0C7X3 344 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 PVRP15151 417 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 TPSB2P20231 275 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 NMBRP28336 390 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 PEBP1P30086 187 aaKnown RBP14.4□□□□□ -0.1
CLN3-213ENST00000565047 CCR10P46092 362 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 NPY2RP49146 381 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 SESN2P58004 480 aaPredicted RBP14.4□□□□□ -0.1
CLN3-213ENST00000565047 PRKAA1Q13131 559 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 GPS2Q13227 327 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 BRD3Q15059 726 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 TPSAB1Q15661 275 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 DEFB109BQ30KR1 87 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 ARMC6Q6NXE6 501 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 LRRC8BQ6P9F7 803 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 TMEM135Q86UB9 458 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 SLC22A15Q8IZD6 547 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 OR6P1Q8NGX9 317 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 OR1L3Q8NH93 324 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 APOBEC4Q8WW27 367 aaKnown RBP14.4□□□□□ -0.1
CLN3-213ENST00000565047 MAIP1Q8WWC4 291 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 IL22Q9GZX6 179 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 CHRNA10Q9GZZ6 450 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 FAM60AQ9NP50 221 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 SPHK1Q9NYA1 384 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 KCND3Q9UK17 655 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 ASF1AQ9Y294 204 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 PCDHB3Q9Y5E6 796 aa14.4□□□□□ -0.1
CLN3-213ENST00000565047 RELNP78509 3460 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 GSAPA4D1B5 854 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 C2orf74A8MZ97 194 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 CPNE3O75131 537 aaKnown RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 CREG1O75629 220 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 SCRG1O75711 98 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 SLCO2B1O94956 709 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 CAPN1P07384 714 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 CDH3P22223 829 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 AOAHP28039 575 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 PTPN4P29074 926 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 ARL4DP49703 201 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 CDK16Q00536 496 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 KCNJ11Q14654 390 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 FASTKD1Q53R41 847 aaKnown RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 TMTC4Q5T4D3 741 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 IZUMO3Q5VZ72 239 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 ZNF385CQ66K41 422 aaPredicted RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 C16orf46Q6P387 395 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 ZNF449Q6P9G9 518 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 SPESP1Q6UW49 350 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 CDHR3Q6ZTQ4 885 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 PPHLN1Q8NEY8 458 aaKnown RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLN3-213ENST00000565047 MFSD3Q96ES6 412 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 GPR87Q9BY21 358 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 MRM3Q9HC36 420 aaKnown RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 SYTL2Q9HCH5 934 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 HOMER3Q9NSC5 361 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms