RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 STBD1O95210 358 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 CDH1P12830 882 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 IGFBP4P22692 258 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ECHS1P30084 290 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ACSL1P33121 698 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 RYKP34925 604 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 CLCN4P51793 760 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 DCDC1P59894 354 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 RFTN1Q14699 578 aaPredicted RBP12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 HSDL1Q3SXM5 330 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 SLC9A4Q6AI14 798 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 MSANTD1Q6ZTZ1 278 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 CHST9Q7L1S5 443 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 LRRC20Q8TCA0 184 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 SLC6A15Q9H2J7 730 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 DNAAF2Q9NVR5 837 aaKnown RBP12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 RBMX2Q9Y388 322 aaKnown RBP12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 PCDHGC4Q9Y5F7 938 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 AGPSO00116 658 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 PDPK1O15530 556 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 NCK1P16333 377 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 HSD17B2P37059 387 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 DAOAP59103 153 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 FAM189A2Q15884 450 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 CARTPTQ16568 116 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 FBXO43Q4G163 708 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 NUP54Q7Z3B4 507 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ANKRD46Q86W74 232 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 HID1Q8IV36 788 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 RFT1Q96AA3 541 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZFP3Q96NJ6 502 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 MARCH7Q9H992 704 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 SNTG1Q9NSN8 517 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 MARK1Q9P0L2 795 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 NOCTQ9UK39 431 aaKnown RBP12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 WASF2Q9Y6W5 498 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 IQCF5A8MTL0 148 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 AGRPO00253 132 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR1I1O60431 355 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ACSBG2Q5FVE4 666 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 GALNTL5Q7Z4T8 443 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 GALNT7Q86SF2 657 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 SPAG16Q8N0X2 631 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 LCN9Q8WX39 176 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 ASB9Q96DX5 294 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 RAB11FIP5Q9BXF6 653 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 TTYH3Q9C0H2 523 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 PDZD7Q9H5P4 517 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 FARSBQ9NSD9 589 aaKnown RBP12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 FBXW11Q9UKB1 542 aa12.99□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR2AG2A6NM03 316 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PRH1P02810 166 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 HSPB3Q12988 150 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GRIK5Q16478 980 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GPR33Q49SQ1 333 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 POMZP3Q6PJE2 187 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 TAC4Q86UU9 113 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 LINC00471Q8N535 108 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PPP1R13LQ8WUF5 828 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 C17orf50Q8WW18 174 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PLD4Q96BZ4 506 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 FCRL5Q96RD9 977 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR51V1Q9H2C8 321 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GOLGA2P5Q9HBQ8 144 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 C11orf16Q9NQ32 467 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 MOCS1Q9NZB8 636 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PCDHA2Q9Y5H9 948 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 LINGO3P0C6S8 592 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 CD36P16671 472 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 IMPDH1P20839 514 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR3A3P47888 321 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR3A2P47893 321 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 CCNHP51946 323 aaPredicted RBP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 MAZP56270 477 aaKnown RBP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 TIGD6Q17RP2 521 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZBED5Q49AG3 693 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 UBAP2Q5T6F2 1119 aaKnown RBP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OGFOD2Q6N063 350 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PCDH19Q8TAB3 1148 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 CEP76Q8TAP6 659 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 HIST1H2AAQ96QV6 131 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 IFT27Q9BW83 186 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 FKBPLQ9UIM3 349 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 ATRNO75882 1429 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 NT5C1B-RDH14C9J2C7 533 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 TACSTD2P09758 323 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GSTM3P21266 225 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 CSTF2P33240 577 aaKnown RBP eCLIP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 YAP1P46937 504 aaKnown RBP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 PDX1P52945 283 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GBX2P52951 348 aaPredicted RBP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 TARDBPQ13148 414 aaKnown RBP eCLIP12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 GPR153Q6NV75 609 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 ZNF615Q8N8J6 731 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 COX18Q8N8Q8 333 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 TTLQ8NG68 377 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR2L3Q8NG85 312 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR7D4Q8NG98 312 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 KCTD7Q96MP8 289 aa12.98□□□□□ -0.33
CSPG4P11-201ENST00000560634 LGR4Q9BXB1 951 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms