RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RALGDSQ12967 914 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SEMA3BQ13214 749 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 EIF4HQ15056 248 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PLEKHG6Q3KR16 790 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CCNYL2Q5T2Q4 361 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TMEM198Q66K66 360 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF773Q6PK81 442 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SERPINA13PQ6UXR4 307 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PRR23BQ6ZRT6 265 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TRMT11Q7Z4G4 463 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DHFR2Q86XF0 187 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CACUL1Q86Y37 369 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 OFCC1Q8IZS5 231 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 BPIFB6Q8NFQ5 453 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SNX19Q92543 992 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 RTP4Q96DX8 246 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TXNDC15Q96J42 360 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MAGED4Q96JG8 741 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MARK4Q96L34 752 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MRGPRX3Q96LB0 322 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MRGPRX1Q96LB2 322 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 FEM1AQ9BSK4 669 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 C9orf16Q9BUW7 83 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MUC3BQ9H195 1237 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 POLMQ9NP87 494 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SPAG4Q9NPE6 437 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PCDH12Q9NPG4 1184 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SCUBE2Q9NQ36 999 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 C8orf4Q9NR00 106 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF358Q9NW07 568 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 QPCTLQ9NXS2 382 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DTLQ9NZJ0 730 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TXNDC16Q9P2K2 825 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SLC17A6Q9P2U8 582 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 VTI1BQ9UEU0 232 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF229Q9UJW7 825 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SATB2Q9UPW6 733 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NEU3Q9UQ49 428 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PCDHGA3Q9Y5H0 932 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 OR51B4Q9Y5P0 310 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 COPG1Q9Y678 874 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 THADAQ6YHU6 1953 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MUC22E2RYF6 1773 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 A0A0D9SEW6 157 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CCDC163A0A0D9SF12 145 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 A0A1W2PQ67 120 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SLCO1B7G3V0H7 640 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ASNA1O43681 348 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 RPP40O75818 363 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ALDH1A2O94788 518 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 UGT2B4P06133 528 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 BCKDHBP21953 392 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 EEF1B2P24534 225 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 RBL1P28749 1068 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CAPGP40121 348 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NR4A2P43354 598 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NKX2-5P52952 324 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PRKAA2P54646 552 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CDH4P55283 916 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NIPAL4Q0D2K0 466 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF177Q13360 481 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NAB1Q13506 487 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SIM2Q14190 667 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 FNDC3BQ53EP0 1204 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TBCELQ5QJ74 424 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MANEALQ5VSG8 457 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 BROXQ5VW32 411 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 SDE2Q6IQ49 451 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 LRRC8EQ6NSJ5 796 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 UGT3A1Q6NUS8 523 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF534Q76KX8 674 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 BPHLQ86WA6 291 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TP53INP2Q8IXH6 220 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 UNC5BQ8IZJ1 945 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PGBD3Q8N328 593 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CLIP4Q8N3C7 705 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DHRSXQ8N5I4 330 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 OR2T34Q8NGX1 318 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 OR2T3Q8NH03 318 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 WFIKKN2Q8TEU8 576 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 STON2Q8WXE9 905 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MED30Q96HR3 178 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ATP13A3Q9H7F0 1226 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 IFT80Q9P2H3 777 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 KLQ9UEF7 1012 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 ITM2BQ9Y287 266 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DGKBQ9Y6T7 804 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 RALGAPA1Q6GYQ0 2036 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 FAM172BPA6NC97 362 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PRORSD1PA6NEY8 169 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 TTC34A8MYJ7 566 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 G3V2L1 256 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 AURKAO14965 403 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 AREL1O15033 823 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SLC22A1O15245 554 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CLDN11O75508 207 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 MT-CO1P00395 513 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CHRNGP07510 517 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 TPSB2P20231 275 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms