RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CCDC103Q8IW40 242 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FAM126BQ8IXS8 530 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF540Q8NDQ6 660 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF548Q8NEK5 533 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 OR6F1Q8NGZ6 308 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 CLHC1Q8NHS4 586 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 NPLOC4Q8TAT6 608 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FBLIM1Q8WUP2 373 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 KCTD13Q8WZ19 329 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FUBP1Q96AE4 644 aaKnown RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 NECTIN4Q96NY8 510 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 TTYH2Q9BSA4 534 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 CDADC1Q9BWV3 514 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ASPSCR1Q9BZE9 553 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 DCSTAMPQ9H295 470 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 MRM3Q9HC36 420 aaKnown RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 NECTIN3Q9NQS3 549 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ENTPD7Q9NQZ7 604 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 C8orf4Q9NR00 106 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FARSBQ9NSD9 589 aaKnown RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 SIRT5Q9NXA8 310 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 DNAJB9Q9UBS3 223 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 COL1A2P08123 1366 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LOC285556D6RIA3 1793 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MROH6A6NGR9 719 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 AGAP5A6NIR3 686 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 M0R129 80 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TNFRSF10AO00220 468 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 AREL1O15033 823 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MUSKO15146 869 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ASNA1O43681 348 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OR1I1O60431 355 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 KATNA1O75449 491 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 WBP4O75554 376 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CCNKO75909 580 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GSNP06396 782 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MYCLP1P12525 358 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 BMP1P13497 986 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ALOX12P18054 663 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GADD45AP24522 165 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GALNT3Q14435 633 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PON2Q15165 354 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PTCHD3Q3KNS1 767 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 AASDHQ4L235 1098 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ATP6AP1LQ52LC2 224 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 COQ5Q5HYK3 327 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OVOS1Q6IE37 1185 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 AHSA2Q719I0 299 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 THEM5Q8N1Q8 247 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FBXO39Q8N4B4 442 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 EFHBQ8N7U6 833 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MINDY2Q8NBR6 621 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OR2T12Q8NG77 320 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PROX1Q92786 737 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZHX1-C8orf76Q96EF9 292 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 EXOC2Q96KP1 924 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 EGLN2Q96KS0 407 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FCRL2Q96LA5 508 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 Q96MT0 163 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RPRD1AQ96P16 312 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM209Q96SK2 561 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SEPT5Q99719 369 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZBED2Q9BTP6 218 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 THUMPD3Q9BV44 507 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 BEX2Q9BXY8 128 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CPNE5Q9HCH3 593 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ERVK13-1Q9NX77 482 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TAS2R16Q9NYV7 291 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MAGEL2Q9UJ55 1249 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PCTPQ9UKL6 214 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SLC6A14Q9UN76 642 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 POLR3HQ9Y535 204 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PCDHGB1Q9Y5G3 927 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TRIP12Q14669 1992 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 DNAJC25-GNG10A0A024R161 153 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LINC00854A0A1B0GVQ3 168 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FAM234BA2RU67 622 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 C19orf67A6NJJ6 358 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 IQCF5A8MTL0 148 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PCDHGA12O60330 932 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TULP3O75386 442 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RECQL5O94762 991 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SEMA3DO95025 777 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 F9P00740 461 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SERPINA1P01009 418 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CYP11A1P05108 521 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CD52P31358 61 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GJA5P36382 358 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TGM4P49221 684 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CPT1AP50416 773 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF157P51786 506 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GEMP55040 296 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ERVK-8P63133 956 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GALK2Q01415 458 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CREMQ03060 361 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FOXD4Q12950 439 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PRKG2Q13237 762 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MADCAM1Q13477 382 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF235Q14590 738 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms