RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 NLRP9Q7RTR0 991 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 ATCAYQ86WG3 371 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 GPR135Q8IZ08 494 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 DSELQ8IZU8 1212 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 HES6Q96HZ4 224 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 NLNQ9BYT8 704 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 TSGA10Q9BZW7 698 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 ACSS2Q9NR19 701 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 TLK1Q9UKI8 766 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 PACSIN2Q9UNF0 486 aaPredicted RBP12.73□□□□□ -0.37
RTN3-212ENST00000543123 SNX7Q9UNH6 387 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 PADI2Q9Y2J8 665 aa12.73□□□□□ -0.37
RTN3-212ENST00000543123 LRRK2Q5S007 2527 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 RELNP78509 3460 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 CCDC78A2IDD5 438 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 E7EQ34 232 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 DDX3YO15523 660 aaKnown RBP12.72□□□□□ -0.37
RTN3-212ENST00000543123 AGXTP21549 392 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 PSMA3P25788 255 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 PDHA2P29803 388 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 FDFT1P37268 417 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 CDKN1CP49918 316 aaPredicted RBP12.72□□□□□ -0.37
RTN3-212ENST00000543123 GDF10P55107 478 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 SPESP1Q6UW49 350 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 TMEM135Q86UB9 458 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 PIANPQ8IYJ0 282 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 TBC1D21Q8IYX1 336 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 ELMO1Q92556 727 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 DESI2Q9BSY9 194 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 CHST8Q9H2A9 424 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 ACTR10Q9NZ32 417 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 OR6C2Q9NZP2 312 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 RIMKLBQ9ULI2 386 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 ASF1AQ9Y294 204 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 R3HDM2Q9Y2K5 976 aaKnown RBP12.72□□□□□ -0.37
RTN3-212ENST00000543123 PCDHGA9Q9Y5G4 932 aaKnown RBP12.72□□□□□ -0.37
RTN3-212ENST00000543123 AP1M2Q9Y6Q5 423 aa12.72□□□□□ -0.37
RTN3-212ENST00000543123 BTN3A3O00478 584 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 IFNB1P01574 187 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 RPN2P04844 631 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 CD63P08962 238 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PRSS56P0CW18 603 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 ST6GAL1P15907 406 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 CDC25BP30305 580 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 RORAP35398 523 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 RPS18P62269 152 aaKnown RBP12.71□□□□□ -0.37
RTN3-212ENST00000543123 ABRQ12979 859 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PRKG2Q13237 762 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 IL10RAQ13651 578 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 AARS2Q5JTZ9 985 aaKnown RBP12.71□□□□□ -0.37
RTN3-212ENST00000543123 PLEKHS1Q5SXH7 462 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 FBXO38Q6PIJ6 1188 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 TMEM139Q8IV31 216 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 SYTL1Q8IYJ3 562 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 ADGRF3Q8IZF5 1079 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 ENDOVQ8N8Q3 282 aaKnown RBP12.71□□□□□ -0.37
RTN3-212ENST00000543123 CCDC89Q8N998 374 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PHC3Q8NDX5 983 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 OR52K1Q8NGK4 314 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 OR1L3Q8NH93 324 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 OR5K2Q8NHB8 316 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PEX13Q92968 403 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 TCTN2Q96GX1 697 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PPM1MQ96MI6 270 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 TRAPPC9Q96Q05 1148 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 RANBP9Q96S59 729 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 DHRS4Q9BTZ2 278 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 SLC25A23Q9BV35 468 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 CHRNA10Q9GZZ6 450 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 ING2Q9H160 280 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 AKIRIN1Q9H9L7 192 aaPredicted RBP12.71□□□□□ -0.37
RTN3-212ENST00000543123 PIH1D1Q9NWS0 290 aaKnown RBP12.71□□□□□ -0.37
RTN3-212ENST00000543123 TCFL5Q9UL49 500 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 ZNF148Q9UQR1 794 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 PCDHGB7Q9Y5F8 929 aa12.71□□□□□ -0.37
RTN3-212ENST00000543123 NBASA2RRP1 2371 aa12.71□□□□□ -0.38
RTN3-212ENST00000543123 CCDC162PA2VCL2 907 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 ARGFXA6NJG6 315 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 LIASO43766 372 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 KRT86O43790 486 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 SUN1O94901 812 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 ADRA1DP25100 572 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 FOXN2P32314 431 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 RRADP55042 308 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 PRAMEP78395 509 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 NCF4Q15080 339 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 CCDC38Q502W7 563 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 DNAJC21Q5F1R6 531 aaKnown RBP12.7□□□□□ -0.38
RTN3-212ENST00000543123 RAB43Q86YS6 212 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 HPS6Q86YV9 775 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 TAB3Q8N5C8 712 aaPredicted RBP12.7□□□□□ -0.38
RTN3-212ENST00000543123 EFCAB3Q8N7B9 438 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 C19orf47Q8N9M1 422 aaKnown RBP12.7□□□□□ -0.38
RTN3-212ENST00000543123 SLC38A9Q8NBW4 561 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 PPHLN1Q8NEY8 458 aaKnown RBP12.7□□□□□ -0.38
RTN3-212ENST00000543123 OR5AR1Q8NGP9 310 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 ATG4AQ8WYN0 398 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 IP6K3Q96PC2 410 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 RUFY1Q96T51 708 aa12.7□□□□□ -0.38
RTN3-212ENST00000543123 XKR8Q9H6D3 395 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms