RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SLC9A3R1O14745 358 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 ZSCAN9O15535 394 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 AP2A2O94973 939 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 CSPG5O95196 566 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 EPB42P16452 691 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 HSPA13P48723 471 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 CLCN2P51788 898 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ARHGEF7Q14155 803 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 NR6A1Q15406 480 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 GGTA1PQ4G0N0 100 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 DLEU7Q6UYE1 221 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 DPPA4Q7L190 304 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 LRRC70Q7Z2Q7 622 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 SPRED2Q7Z698 418 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 GRASPQ7Z6J2 395 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 TRAM1L1Q8N609 369 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 DDHD1Q8NEL9 900 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 CYB5D2Q8WUJ1 264 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 TRIM15Q9C019 465 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 SLC32A1Q9H598 525 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 PARVBQ9HBI1 364 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 PCDH12Q9NPG4 1184 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 CD84Q9UIB8 345 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 RNF11Q9Y3C5 154 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 KCNE1BA0A087WTH5 132 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 MANBAO00462 879 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 RGS14O43566 566 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 RSL1D1O76021 490 aaKnown RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 SYN1P17600 705 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 RECQLP46063 649 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 RPIAP49247 311 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 GSK3BP49841 420 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 PDK3Q15120 406 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 VRK3Q8IV63 474 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 SORCS1Q8WY21 1168 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ABCG8Q9H221 673 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 FAM83DQ9H4H8 585 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 RAD18Q9NS91 495 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 IL36AQ9UHA7 158 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ANGPTL3Q9Y5C1 460 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 KIAA1549LQ6ZVL6 1849 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 LOC730098B7Z3J9 87 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ZNF197O14709 1029 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 HOXC11O43248 304 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 CYP17A1P05093 508 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 DHCR24Q15392 516 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 TIGD2Q4W5G0 525 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ARSIQ5FYB1 569 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 UBE2R2Q712K3 238 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 TECPR1Q7Z6L1 1165 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 ANKFN1Q8N957 763 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 PIP4K2CQ8TBX8 421 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 SPATA16Q9BXB7 569 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 SLAMF8Q9P0V8 285 aa13.48□□□□□ -0.25
RTN3-210ENST00000540798 POLR3HQ9Y535 204 aaPredicted RBP13.48□□□□□ -0.25
RTN3-210ENST00000540798 C15orf38-AP3S2A0A0A6YYH1 394 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 TCRBV5S2A0A599 114 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 KPNA5O15131 536 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ARPC2O15144 300 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 BMP2P12643 396 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 GRIA3P42263 894 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 HNMTP50135 292 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 MAD2L1Q13257 205 aaPredicted RBP13.47□□□□□ -0.25
RTN3-210ENST00000540798 ZNF805Q5CZA5 627 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 RABL3Q5HYI8 236 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 NANOGP8Q6NSW7 305 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ARPINQ7Z6K5 226 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 NAT16Q8N8M0 369 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 PHC3Q8NDX5 983 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 CANT1Q8WVQ1 401 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ZNF597Q96LX8 424 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 VPS35Q96QK1 796 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 HBEGFQ99075 208 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ALG2Q9H553 416 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 NANOGQ9H9S0 305 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 FARSBQ9NSD9 589 aaKnown RBP13.47□□□□□ -0.25
RTN3-210ENST00000540798 SLC27A6Q9Y2P4 619 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 KIAA0100Q14667 2235 aaKnown RBP13.47□□□□□ -0.25
RTN3-210ENST00000540798 DENND4AQ7Z401 1863 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 COL4A3Q01955 1670 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 LRRK1Q38SD2 2015 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 SERTM1A2A2V5 107 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ZNF839A8K0R7 811 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 NPIPB8E9PQR5 432 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 STAMBPO95630 424 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ASLP04424 464 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 SLC2A7Q6PXP3 512 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 ERMP1Q7Z2K6 904 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 HID1Q8IV36 788 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 CELF5Q8N6W0 485 aaKnown RBP13.47□□□□□ -0.25
RTN3-210ENST00000540798 WFIKKN2Q8TEU8 576 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 SCAMP4Q969E2 229 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 EFHD1Q9BUP0 239 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 INTS7Q9NVH2 962 aaKnown RBP13.47□□□□□ -0.25
RTN3-210ENST00000540798 ARL15Q9NXU5 204 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 CHD7Q9P2D1 2997 aa13.47□□□□□ -0.25
RTN3-210ENST00000540798 FADS2P1A8MWK0 482 aa13.46□□□□□ -0.25
RTN3-210ENST00000540798 CLDN9O95484 217 aa13.46□□□□□ -0.25
RTN3-210ENST00000540798 PRPH2P23942 346 aa13.46□□□□□ -0.25
RTN3-210ENST00000540798 VARSP26640 1264 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms