RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SH3GL1Q99961 368 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 COPS4Q9BT78 406 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 KRT84Q9NSB2 600 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 PDP1Q9P0J1 537 aaPredicted RBP12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 OSGIN1Q9UJX0 560 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 NAALAD2Q9Y3Q0 740 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 PCDHGB6Q9Y5F9 930 aa12.62□□□□□ -0.39
SFSWAP-209ENST00000540469 hCG_2039718K7EN88 272 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PIRO00625 290 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 CREG1O75629 220 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 CNPP09543 421 aaKnown RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PRSS56P0CW18 603 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SOX6P35712 828 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PIK3CGP48736 1102 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 CACNB2Q08289 660 aaPredicted RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PTGR1Q14914 329 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 FAAH2Q6GMR7 532 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 MICALL2Q8IY33 904 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 OR52B6Q8NGF0 335 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 RHEBL1Q8TAI7 183 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC16A10Q8TF71 515 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 KIAA1191Q96A73 305 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ERVK13-1Q9NX77 482 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF112Q9UJU3 913 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GJD2Q9UKL4 321 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 METTL15A6NJ78 407 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ZSCAN5BA6NJL1 495 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SSX4O60224 188 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 CACNG3O60359 315 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC15A1P46059 708 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 HTR6P50406 440 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF33AQ06730 810 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SOX4Q06945 474 aaPredicted RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PRSS48Q7RTY5 328 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GPSM1Q86YR5 675 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 UBE2FQ969M7 185 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PCED1BQ96HM7 432 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GPR21Q99679 349 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 KCNS3Q9BQ31 491 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 R3HDMLQ9H3Y0 253 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 DUSP21Q9H596 190 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 EXOSC4Q9NPD3 245 aaKnown RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 AASDHPPTQ9NRN7 309 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 PCDHGB1Q9Y5G3 927 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 FFAR3O14843 346 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC16A6O15403 523 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GPR42O15529 346 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 AZGP1P25311 298 aaKnown RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GMPSP49915 693 aaPredicted RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ARPP19P56211 112 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GALNT3Q14435 633 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 ZBTB6Q15916 424 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GTDC1Q4AE62 458 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC38A6Q8IZM9 456 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 DPP10Q8N608 796 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 OR8J3Q8NGG0 315 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 Q96MT0 163 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 RNF39Q9H2S5 420 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GORASP2Q9H8Y8 452 aa12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 SAMHD1Q9Y3Z3 626 aaKnown RBP12.61□□□□□ -0.39
SFSWAP-209ENST00000540469 GABRDO14764 452 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 PRKCAP17252 672 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 HMGB2P26583 209 aaKnown RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 LIPAP38571 399 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 ZFP36L2P47974 494 aaKnown RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TYSND1Q2T9J0 566 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TBRG1Q3YBR2 411 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 SIRPB2Q5JXA9 342 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 WDR45BQ5MNZ6 344 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 SLX4IPQ5VYV7 408 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 PM20D1Q6GTS8 502 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 CYP4Z1Q86W10 505 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF548Q8NEK5 533 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 OR4L1Q8NH43 312 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 CYP2S1Q96SQ9 504 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 AGO3Q9H9G7 860 aaKnown RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 KCNH4Q9UQ05 1017 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 PEX16Q9Y5Y5 336 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 MIA3Q5JRA6 1907 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 SSC5DA1L4H1 1573 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 CENPFP49454 3210 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 E5RI56 91 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 H3BRB1 525 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 FGF10O15520 208 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 CRYZL1O95825 349 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 HOXB8P17481 243 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 KRT20P35900 424 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 PPP3CCP48454 512 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC10A7Q0GE19 358 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 GRIK4Q16099 956 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 SOWAHCQ53LP3 525 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF517Q6ZMY9 492 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 RAB43Q86YS6 212 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TCAIMQ8N3R3 496 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 BEX2Q9BXY8 128 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 CRTAC1Q9NQ79 661 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TAS2R9Q9NYW1 312 aa12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TMEFF2Q9UIK5 374 aaPredicted RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TRMT6Q9UJA5 497 aaKnown RBP12.6□□□□□ -0.39
SFSWAP-209ENST00000540469 TNS1Q9HBL0 1735 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms