RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 ECT2LQ008S8 904 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 FAM131AQ6UXB0 335 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 OR5K1Q8NHB7 308 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 PRICKLE1Q96MT3 831 aaPredicted RBP13.58□□□□□ -0.23
SYNPO-205ENST00000522122 CHCHD6Q9BRQ6 235 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 HIPK3Q9H422 1215 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 EXD2Q9NVH0 621 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 TBCCD1Q9NVR7 557 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 C9IYK1 514 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 NOBOXO60393 691 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 KERAO60938 352 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 C8GP07360 202 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 ELNP15502 786 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 GJA9P57773 515 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 CEACAM7Q14002 265 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 TEAD4Q15561 434 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 RBM20Q5T481 1227 aaKnown RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 FBXL22Q6P050 247 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 LRRC17Q8N6Y2 441 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 BEND7Q8N7W2 519 aaPredicted RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 ZUFSPQ96AP4 578 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 PLD4Q96BZ4 506 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 ZNF599Q96NL3 588 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 KAT8Q9H7Z6 458 aaKnown RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 TRIM39Q9HCM9 518 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 RUVBL1Q9Y265 456 aaKnown RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 PCDHGA11Q9Y5H2 935 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 PGRMC2O15173 223 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 OR10H2O60403 315 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 CTSEP14091 401 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 RPS24P62847 133 aaKnown RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 TCEA2Q15560 299 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 C2CD4AQ8NCU7 369 aaPredicted RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 TBC1D14Q9P2M4 693 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 G3V2L1 256 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 GLUD1P00367 558 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 ENO2P09104 434 aaPredicted RBP13.58□□□□□ -0.24
SYNPO-205ENST00000522122 KCNE1P15382 129 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 DPY19L1Q2PZI1 675 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 EEF1AKMT1Q8WVE0 214 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 PHF12Q96QT6 1004 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 EBPLQ9BY08 206 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 MEAF6Q9HAF1 191 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 SLC27A6Q9Y2P4 619 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 OR10H1Q9Y4A9 318 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 TESMINQ9Y4I5 508 aa13.58□□□□□ -0.24
SYNPO-205ENST00000522122 HCRTO43612 131 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ECI2O75521 394 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 HIST1H2ABP04908 130 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CDH12P55289 794 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SNAPC1Q16533 368 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SPRYD7Q5W111 196 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 RNF44Q7L0R7 432 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 HIST3H2AQ7L7L0 130 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 TMEM135Q86UB9 458 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ANKLE1Q8NAG6 615 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 TRPV3Q8NET8 790 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 HIST1H2ACQ93077 130 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 BIRC8Q96P09 236 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 IMP3Q9NV31 184 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ZSCAN32Q9NX65 697 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 GALPQ9UBC7 116 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 COQ6Q9Y2Z9 468 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 RBM47A0AV96 593 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SDHDO14521 159 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 NRP1O14786 923 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CCNKO75909 580 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CHRM1P11229 460 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CDH1P12830 882 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CTNNB1P35222 781 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 TRIM32Q13049 653 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SIRPB2Q5JXA9 342 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 DCST1Q5T197 706 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ADAMTS15Q8TE58 950 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 B3GALT6Q96L58 329 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CGREF1Q99674 301 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 TRPS1Q9UHF7 1281 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 DCLK1O15075 740 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ZW10O43264 779 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ERN1O75460 977 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 RNASEH2AO75792 299 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SORBS2O94875 1100 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 HLA-DQA2P01906 255 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 IFNA16P05015 189 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CPOXP36551 454 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 GSK3BP49841 420 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 PSMD4P55036 377 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 NDUFA5Q16718 116 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ATXN7L2Q5T6C5 722 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ZNF697Q5TEC3 545 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 OGFOD2Q6N063 350 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 KRT74Q7RTS7 529 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CHPFQ8IZ52 775 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 OR9I1Q8NGQ6 314 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 GINS4Q9BRT9 223 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CPQQ9Y646 472 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 SLC38A8A6NNN8 435 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 YAP1P46937 504 aaKnown RBP13.57□□□□□ -0.24
SYNPO-205ENST00000522122 ITFG2Q969R8 447 aa13.57□□□□□ -0.24
SYNPO-205ENST00000522122 CDK15Q96Q40 435 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms