RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DUXAA6NLW8 204 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 MRPS14O60783 128 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RCBTB2O95199 551 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 COL6A1P12109 1028 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CPN2P22792 545 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 UQCRC1P31930 480 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CYCSP99999 105 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 DSG2Q14126 1118 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SCARF1Q14162 830 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GNMTQ14749 295 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SYNPOQ8N3V7 929 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CHCHD4Q8N4Q1 142 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ISOC1Q96CN7 298 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TSSK3Q96PN8 268 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF649Q9BS31 505 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CEP41Q9BYV8 373 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 NELFAQ9H3P2 528 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TVP23BQ9NYZ1 205 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SLAIN2Q9P270 581 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TNFRSF10DQ9UBN6 386 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 NDOR1Q9UHB4 597 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 AXIN2Q9Y2T1 843 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TLR4O00206 839 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 HPRP00739 348 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 AOC1P19801 751 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 IMPDH1P20839 514 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 VAMP1P23763 118 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 HTR2BP41595 481 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 NRIP1P48552 1158 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 KHKP50053 298 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 HMGCS2P54868 508 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TLE3Q04726 772 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 EXOC3L2Q2M3D2 409 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RAB41Q5JT25 222 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 STRADAQ7RTN6 431 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GALNT7Q86SF2 657 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TMEM199Q8N511 208 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF676Q8N7Q3 588 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 WDSUB1Q8N9V3 476 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 BEST4Q8NFU0 473 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RIOX1Q9H6W3 641 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GFOD1Q9NXC2 390 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 PAQR5Q9NXK6 330 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GPR75-ASB3A0A0A6YYF3 556 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 NT5C1B-RDH14C9J2C7 533 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 E5RJQ4 531 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RPP40O75818 363 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CSF1RP07333 972 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF182P17025 639 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RPL35P42766 123 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 XKP51811 444 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 PPP5CP53041 499 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TLE2Q04725 743 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CLCQ05315 142 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RALGPS2Q86X27 583 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GEMIN6Q8WXD5 167 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 LURAP1Q96LR2 239 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 APOLD1Q96LR9 279 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CRAMP1Q96RY5 1269 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GON7Q9BXV9 100 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ZIM2Q9NZV7 527 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SH2B3Q9UQQ2 575 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 HSPE1-MOB4S4R3N1 261 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 LMTK3Q96Q04 1460 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 OIP5O43482 229 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 CD86P42081 329 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 TLR1Q15399 786 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 HECTD2Q5U5R9 776 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 OR2T5Q6IEZ7 315 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC27A1Q6PCB7 646 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 DGLUCYQ7Z3D6 616 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 BANPQ8N9N5 519 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 OR2T29Q8NH02 315 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MALSU1Q96EH3 234 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 ELAC1Q9H777 363 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 BRD9Q9H8M2 597 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 EIF2B3Q9NR50 452 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 SAGE1Q9NXZ1 904 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MALT1Q9UDY8 824 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 NME7Q9Y5B8 376 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 TEX13DA0A0J9YY54 714 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 CIB4A0PJX0 185 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 CREBL2O60519 120 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF20P17024 532 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC2A5P22732 501 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 GSTM2P28161 218 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 DLSTP36957 453 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 ETV6P41212 452 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 RARRES1P49788 294 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 S100A10P60903 97 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MTMR2Q13614 643 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MIIPQ5JXC2 388 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM46CQ5VWP2 391 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF572Q7Z3I7 529 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MARVELD2Q8N4S9 558 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 GPR156Q8NFN8 814 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 XAGE5Q8WWM1 108 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 FCAMRQ8WWV6 532 aa11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 MKRN2Q9H000 416 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-217ENST00000512946 FN3KQ9H479 309 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms