RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MILR1Q7Z6M3 343 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FBXO22Q8NEZ5 403 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FNDC8Q8TC99 324 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GTF2H4Q92759 462 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TTPALQ9BTX7 342 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CIPCQ9C0C6 399 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IKZF5Q9H5V7 419 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ELAC1Q9H777 363 aaKnown RBP15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GORASP2Q9H8Y8 452 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TBCCD1Q9NVR7 557 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PKP3Q9Y446 797 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PRSS21Q9Y6M0 314 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SLC30A1Q9Y6M5 507 aa15.78■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SCN8AQ9UQD0 1980 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPW3 197 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RAD51BO15315 384 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MAGEB3O15480 346 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GUCA1CO95843 209 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GALTP07902 379 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SLC2A4P14672 509 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ITGB6P18564 788 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NFKBIAP25963 317 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HMOX2P30519 316 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RPL38P63173 70 aaKnown RBP15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TWF1Q12792 350 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GRSF1Q12849 480 aaKnown RBP eCLIP15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PTGR1Q14914 329 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NEDD8Q15843 81 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FAM98BQ52LJ0 330 aaKnown RBP15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ATXN7L2Q5T6C5 722 aaPredicted RBP15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF773Q6PK81 442 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ENPP6Q6UWR7 440 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SERPINA9Q86WD7 417 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MSRB3Q8IXL7 192 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PDZD8Q8NEN9 1154 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PPP3R2Q96LZ3 170 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TUBA1CQ9BQE3 449 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GPR63Q9BZJ6 419 aa15.77■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 KCNH1O95259 989 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FGBP02675 491 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 THRBP10828 461 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 JUNBP17275 347 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RPL17P18621 184 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MATN1P21941 496 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RPS3P23396 243 aaKnown RBP eCLIP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MTHFRP42898 656 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PIK3CGP48736 1102 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CHRNB3Q05901 458 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FGD3Q5JSP0 725 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 STK32CQ86UX6 486 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CROCCP3Q8IVE0 287 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ARL10Q8N8L6 244 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF548Q8NEK5 533 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR13F1Q8NGS4 319 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PNPT1Q8TCS8 783 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PIH1D2Q8WWB5 315 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC13A3Q8WWT9 602 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OVCA2Q8WZ82 227 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TANKQ92844 425 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CNDP2Q96KP4 475 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 C17orf80Q9BSJ5 609 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 KLF16Q9BXK1 252 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MAGEE1Q9HCI5 957 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FARSBQ9NSD9 589 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC25A37Q9NYZ2 338 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UTS2RQ9UKP6 389 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FCF1Q9Y324 198 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OARD1Q9Y530 152 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ANAPC1Q9H1A4 1944 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TMEM247A6NEH6 219 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 S100BP04271 92 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NAT1P18440 290 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MSH3P20585 1137 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HOXD12P35452 270 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GDF5P43026 501 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 IST1P53990 364 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SHHQ15465 462 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CLPPQ16740 277 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PHKG1Q16816 387 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PTRHD1Q6GMV3 140 aaKnown RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SULT1C3Q6IMI6 304 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAM151BQ6UXP7 276 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CERS6Q6ZMG9 384 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CHCHD4Q8N4Q1 142 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR2T12Q8NG77 320 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR10A6Q8NH74 314 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TBC1D15Q8TC07 691 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC22A17Q8WUG5 538 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FIG4Q92562 907 aa15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAF1Q9UNN5 650 aaPredicted RBP15.76■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SH3PXD2BA1X283 911 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FFAR3O14843 346 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GPR42O15529 346 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ELAVL2Q12926 359 aaKnown RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 INO80DQ53TQ3 878 aaPredicted RBP15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CRIPAKQ8N1N5 446 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SDR16C5Q8N3Y7 309 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CARNMT1Q8N4J0 409 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 AADATQ8N5Z0 425 aa15.75■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TERB1Q8NA31 727 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms