RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 OR2AJ1Q8NGZ0 328 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 RNF128Q8TEB7 428 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 ZNF653Q96CK0 615 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 PRAC1Q96KF2 57 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 ZNF599Q96NL3 588 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 TREX2Q9BQ50 279 aaPredicted RBP5.06□□□□□ -1.6
SF3B1-212ENST00000496458 TUBB2BQ9BVA1 445 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 VN1R1Q9GZP7 353 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 SPATC1LQ9H0A9 340 aa5.06□□□□□ -1.6
SF3B1-212ENST00000496458 NESP48681 1621 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 ZNF644Q9H582 1327 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 OR2A25A4D2G3 310 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 PRR32B1ATL7 298 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 SH2B2O14492 632 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 EDN1P05305 212 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 CALRP27797 417 aaKnown RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 CLK1P49759 484 aaKnown RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 KRTAP10-12P60413 245 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 CX3CL1P78423 397 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 MDH1BQ5I0G3 518 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 CFAP161Q6P656 301 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 BHLHB9Q6PI77 547 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 LINGO4Q6UY18 593 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 KBTBD8Q8NFY9 601 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 GRHL3Q8TE85 626 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 TAF15Q92804 592 aaKnown RBP eCLIP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 FNDC11Q9BVV2 318 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 DPAGT1Q9H3H5 408 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 GHITMQ9H3K2 345 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 A4GALTQ9NPC4 353 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 ATAD3AQ9NVI7 634 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 WSB2Q9NYS7 404 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 RASAL2Q9UJF2 1139 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 OSGIN1Q9UJX0 560 aa5.05□□□□□ -1.6
SF3B1-212ENST00000496458 NOL7Q9UMY1 257 aaKnown RBP5.05□□□□□ -1.6
SF3B1-212ENST00000496458 RPGRIP1LQ68CZ1 1315 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 HYKKA2RU49 373 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 MEIOCA2RUB1 952 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 HEPACAM2A8MVW5 462 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 ATP6V0E1O15342 81 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 XRCC3O43542 346 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 PIGNO95427 931 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 FAM157CP0CG43 387 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 GABRA5P31644 462 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 HOXD13P35453 343 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 NAP1L1P55209 391 aaKnown RBP5.04□□□□□ -1.6
SF3B1-212ENST00000496458 SIRPAP78324 504 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 SP3Q02447 781 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 DMPKQ09013 629 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 ADAMTSL4-AS1Q5T5F5 129 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 CYP4A22Q5TCH4 519 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 FAM205BPQ63HN1 556 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 FIGLAQ6QHK4 219 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 KBTBD6Q86V97 674 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 FBXO39Q8N4B4 442 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 PPFIBP2Q8ND30 876 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 GMPPAQ96IJ6 420 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-212ENST00000496458 SERINC2Q96SA4 455 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 OPRPNQ99935 248 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-212ENST00000496458 SDF4Q9BRK5 362 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 KIFC3Q9BVG8 833 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 FLRT3Q9NZU0 649 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 PTRH2Q9Y3E5 179 aaKnown RBP5.04□□□□□ -1.6
SF3B1-212ENST00000496458 RIPK3Q9Y572 518 aa5.04□□□□□ -1.6
SF3B1-212ENST00000496458 TOP2AP11388 1531 aaKnown RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 GAPDHSO14556 408 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ARHGEF9O43307 516 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 PRAMEF11O60813 436 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 AVILO75366 819 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 GJB3O75712 270 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 TPOP07202 933 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ACSL1P33121 698 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 NRIP1P48552 1158 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 LUMP51884 338 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 SNRPD1P62314 119 aaKnown RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 CDR2Q01850 454 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 PWWP2BQ6NUJ5 590 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 MZT2BQ6NZ67 158 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 MYPOPQ86VE0 399 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 RPAP2Q8IXW5 612 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 POC5Q8NA72 575 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 TMEM178AQ8NBL3 297 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 PAPD5Q8NDF8 572 aaKnown RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ARRDC1-AS1Q9H2J1 176 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 OSGEPL1Q9H4B0 414 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ERVMER34-1Q9H9K5 563 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 INTS9Q9NV88 658 aaKnown RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 TMEM181Q9P2C4 612 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ADD3Q9UEY8 706 aaKnown RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 TBC1D29Q9UFV1 150 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 VPS28Q9UK41 221 aa5.03□□□□□ -1.6
SF3B1-212ENST00000496458 ZHX1Q9UKY1 873 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-212ENST00000496458 CLSPNQ9HAW4 1339 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 ERCC6Q03468 1493 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 IGHV4-4A0A075B6R2 117 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 A0A087WW49 117 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 LOC101059948A0A1B0GTJ6 334 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 EXTL3O43909 919 aa5.02□□□□□ -1.61
SF3B1-212ENST00000496458 CDC123O75794 336 aaPredicted RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms