RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 PPM1NQ8N819 430 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 EIF1ADQ8N9N8 165 aaKnown RBP12.14□□□□□ -0.47
TRA2A-209ENST00000494255 CD200R1Q8TD46 325 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 CDC42EP4Q9H3Q1 356 aaKnown RBP12.14□□□□□ -0.47
TRA2A-209ENST00000494255 SRMSQ9H3Y6 488 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 RHOJQ9H4E5 214 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 SMYD2Q9NRG4 433 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 MED16Q9Y2X0 877 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 VWA7Q9Y334 891 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 ENTPD2Q9Y5L3 495 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 SPTBN2O15020 2390 aa12.14□□□□□ -0.47
TRA2A-209ENST00000494255 FAM221BA6H8Z2 402 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 OR6C74A6NCV1 312 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 ACSL3O95573 720 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CD9P21926 228 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CCKBRP32239 447 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 GP5P40197 560 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CAPZBP47756 277 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 RGS4P49798 205 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 LIMK2P53671 638 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CDKN2DP55273 166 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 TRA2AQ13595 282 aaKnown RBP eCLIP12.13□□□□□ -0.472e-8■■■■■ 41.5
TRA2A-209ENST00000494255 KLHL38Q2WGJ6 581 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 LRRC8EQ6NSJ5 796 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 NEK10Q6ZWH5 1172 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 B3GNT8Q7Z7M8 397 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SLITRK4Q8IW52 837 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 DCUN1D3Q8IWE4 304 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 OR4E2Q8NGC2 313 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 OR52E1Q8NGJ3 308 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 GIMAP7Q8NHV1 300 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 MAGEC3Q8TD91 643 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 RSC1A1Q92681 617 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 ZDHHC12Q96GR4 267 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 VPS39Q96JC1 886 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SLC30A3Q99726 388 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SEMA6CQ9H3T2 930 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 TFB2MQ9H5Q4 396 aaKnown RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 OGFRQ9NZT2 677 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 AKAP7Q9P0M2 348 aaPredicted RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 COL27A1Q8IZC6 1860 aaPredicted RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 DCHS1Q96JQ0 3298 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CCDC187A0A096LP49 1063 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 IGHV5-10-1A0A0J9YXX1 117 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 FAM95CA0A1B0GW59 222 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 EIF3FO00303 357 aaPredicted RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 MPC1LP0DKB6 136 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 HOXB3P14651 431 aaPredicted RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SAT1P21673 171 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 MCM3P25205 808 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SHMT2P34897 504 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CCNFP41002 786 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 PDX1P52945 283 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SLC12A2P55011 1212 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CFHR1Q03591 330 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 ZFP36L1Q07352 338 aaKnown RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 PRKAA1Q13131 559 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 SNAP47Q5SQN1 464 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 GRTP1Q5TC63 336 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 IRGCQ6NXR0 463 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 TMPRSS9Q7Z410 1059 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 AMIGO1Q86WK6 493 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CPNE9Q8IYJ1 553 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 LIN37Q96GY3 246 aaPredicted RBP12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CCDC74BQ96LY2 380 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 CYTH2Q99418 400 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 KLHL3Q9UH77 587 aa12.13□□□□□ -0.47
TRA2A-209ENST00000494255 MN1Q10571 1320 aaPredicted RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 OR5K3A6NET4 321 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 CAPN5O15484 640 aaPredicted RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 MATN4O95460 622 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 CATP04040 527 aaKnown RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 FDXRP22570 491 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 MPSTP25325 297 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 TNFRSF8P28908 595 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 SPRP35270 261 aaPredicted RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 EFTUD2Q15029 972 aaKnown RBP eCLIP12.12□□□□□ -0.471e-10■■■■□ 23.4
TRA2A-209ENST00000494255 ZNF574Q6ZN55 896 aaPredicted RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 TRMT10CQ7L0Y3 403 aaKnown RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 MYO1HQ8N1T3 1032 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 RAB42Q8N4Z0 105 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 UBXN4Q92575 508 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 TSPAN17Q96FV3 270 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 TGM7Q96PF1 710 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 RBBP8Q99708 897 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 NRSN2Q9GZP1 204 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 RAB33BQ9H082 229 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 XKR8Q9H6D3 395 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 HRASLS2Q9NWW9 162 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 TMEM9Q9P0T7 183 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 EPHA6Q9UF33 1036 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 SLC39A10Q9ULF5 831 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 RUVBL2Q9Y230 463 aaKnown RBP12.12□□□□□ -0.47
TRA2A-209ENST00000494255 NFS1Q9Y697 457 aa12.12□□□□□ -0.47
TRA2A-209ENST00000494255 CACNA1AO00555 2505 aa12.11□□□□□ -0.47
TRA2A-209ENST00000494255 A0A087WUV0 522 aaPredicted RBP12.11□□□□□ -0.47
TRA2A-209ENST00000494255 GSAPA4D1B5 854 aa12.11□□□□□ -0.47
TRA2A-209ENST00000494255 MATN2O00339 956 aa12.11□□□□□ -0.47
TRA2A-209ENST00000494255 HGSO14964 777 aaPredicted RBP12.11□□□□□ -0.47
TRA2A-209ENST00000494255 RASSF9O75901 435 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms