RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 TMEM164Q5U3C3 297 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 DUS1LQ6P1R4 473 aaKnown RBP14.25□□□□□ -0.13
LIMS3-205ENST00000487150 C3orf62Q6ZUJ4 267 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 PRSS42Q7Z5A4 293 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 B3GNT8Q7Z7M8 397 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 AMIGO1Q86WK6 493 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 KMT5CQ86Y97 462 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 CNPY4Q8N129 248 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 FBXO39Q8N4B4 442 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 LKAAEAR1Q8TD35 194 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 UBXN4Q92575 508 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 VPS39Q96JC1 886 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 CDYLQ9Y232 598 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 LOXL2Q9Y4K0 774 aa14.25□□□□□ -0.13
LIMS3-205ENST00000487150 SPEGQ15772 3267 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 TCRBV9S1A1TA0A576 114 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 TLCD2A6NGC4 264 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF839A8K0R7 811 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 C2orf74A8MZ97 194 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CAPN5O15484 640 aaPredicted RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 RASSF9O75901 435 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 HAUS5O94927 633 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CATP04040 527 aaKnown RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 TYRP1P17643 537 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CLCN7P51798 805 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CSE1LP55060 971 aaKnown RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 C3orf38Q5JPI3 329 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 IRGCQ6NXR0 463 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 TRMT10BQ6PF06 316 aaKnown RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CNSTQ6PJW8 725 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 UNC5BQ8IZJ1 945 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 EIF1ADQ8N9N8 165 aaKnown RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 OR52E1Q8NGJ3 308 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 IFT81Q8WYA0 676 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 RSC1A1Q92681 617 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 INPP5DQ92835 1189 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 RAD51AP1Q96B01 352 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 SLC22A18Q96BI1 424 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 C9orf72Q96LT7 481 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF578Q96N58 590 aaPredicted RBP14.24□□□□□ -0.13
LIMS3-205ENST00000487150 TGM7Q96PF1 710 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 CPNE1Q99829 537 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 SEMA6CQ9H3T2 930 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 PLAC1Q9HBJ0 212 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 HRASLS2Q9NWW9 162 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 SATB2Q9UPW6 733 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 DHRS7Q9Y394 339 aa14.24□□□□□ -0.13
LIMS3-205ENST00000487150 PABPN1LA6NDY0 278 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 AHSGP02765 367 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 MPC1LP0DKB6 136 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 HSD17B2P37059 387 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 GP5P40197 560 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 RAB28P51157 221 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 SLC12A2P55011 1212 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 SP140Q13342 867 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 PDAP1Q13442 181 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 SLMAPQ14BN4 828 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF789Q5FWF6 425 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 CAPN12Q6ZSI9 719 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 STRA8Q7Z7C7 330 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 GPATCH11Q8N954 259 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 OR5AR1Q8NGP9 310 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 ZCCHC14Q8WYQ9 949 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 TEFMQ96QE5 360 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 GPR21Q99679 349 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 RHOJQ9H4E5 214 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF768Q9H5H4 540 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 OGFRQ9NZT2 677 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 SPATA7Q9P0W8 599 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 DMGDHQ9UI17 866 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 SLC39A10Q9ULF5 831 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 TDRKHQ9Y2W6 561 aaKnown RBP14.23□□□□□ -0.13
LIMS3-205ENST00000487150 PCDHB11Q9Y5F2 797 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 PCDHGA7Q9Y5G6 932 aa14.23□□□□□ -0.13
LIMS3-205ENST00000487150 ARHGEF17Q96PE2 2063 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 OR6C74A6NCV1 312 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 FAM159BA6NKW6 160 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 B4E171 279 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 FKBP9O95302 570 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 MPOP05164 745 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 HOXB3P14651 431 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 CD82P27701 267 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 MAP4P27816 1152 aaKnown RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 SSTR1P30872 391 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 TSPAN7P41732 249 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 ARL4DP49703 201 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 NAA25Q14CX7 972 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 TBC1D25Q3MII6 688 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF549Q6P9A3 640 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 NAPRTQ6XQN6 538 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 ZNF574Q6ZN55 896 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 TMPRSS9Q7Z410 1059 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 ARHGAP22Q7Z5H3 698 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 ZC3HC1Q86WB0 502 aaKnown RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 VRK3Q8IV63 474 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 MYO1HQ8N1T3 1032 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 SIDT2Q8NBJ9 832 aaKnown RBP14.22□□□□□ -0.13
LIMS3-205ENST00000487150 OR4E2Q8NGC2 313 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 CFAP61Q8NHU2 1237 aa14.22□□□□□ -0.13
LIMS3-205ENST00000487150 CD200R1Q8TD46 325 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms