RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 SPTBN5Q9NRC6 3674 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SRRM3A6NNA2 597 aaPredicted RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 TNFRSF10AO00220 468 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 NPHS1O60500 1241 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 KATNA1O75449 491 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 PSIP1O75475 530 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 MLYCDO95822 493 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 CHEK2O96017 543 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 IMPDH1P20839 514 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 EEF1DP29692 281 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 AVPR2P30518 371 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 HSD17B2P37059 387 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 BDKRB1P46663 353 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SLC1A6P48664 564 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ARRB1P49407 418 aaPredicted RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 NAGLUP54802 743 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ABCE1P61221 599 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 HNRNPKP61978 463 aaKnown RBP eCLIP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 CTBSQ01459 385 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SIM2Q14190 667 aaPredicted RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 RCN2Q14257 317 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SETDB1Q15047 1291 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ANGPT1Q15389 498 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 TCEA2Q15560 299 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 THEMIS2Q5TEJ8 643 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 GKN2Q86XP6 184 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 VRK3Q8IV63 474 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 WDR75Q8IWA0 830 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SYTL1Q8IYJ3 562 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ANKS4BQ8N8V4 417 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 AVL9Q8NBF6 648 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 PDPRQ8NCN5 879 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 CCT6BQ92526 530 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 MED8Q96G25 268 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SCARF2Q96GP6 870 aaPredicted RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 CNDP1Q96KN2 507 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 FERD3LQ96RJ6 166 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 DRC3Q9H069 523 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 EPN3Q9H201 632 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 EBF2Q9HAK2 575 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 PFDN4Q9NQP4 134 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 TM7SF3Q9NS93 570 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 SPASTQ9UBP0 616 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ADAMTS6Q9UKP5 1117 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 PCDHGA2Q9Y5H1 932 aa10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 ATXN2Q99700 1313 aaKnown RBP10.03□□□□□ -0.8
PRPF38A-202ENST00000474048 TECTAO75443 2155 aa10.02□□□□□ -0.8
PRPF38A-202ENST00000474048 UNC80Q8N2C7 3258 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 NEMP2A6NFY4 417 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 NDUFAB1O14561 156 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 VILLO15195 856 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SHOX2O60902 331 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 WDR47O94967 919 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 MATN4O95460 622 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 CFIP05156 583 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 FGF3P11487 239 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 ITPKAP23677 461 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 CCND1P24385 295 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PDHA2P29803 388 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 CSNK1EP49674 416 aaKnown RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 HK2P52789 917 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 GABPB1Q06547 395 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 BST1Q10588 318 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PRKAA1Q13131 559 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 FZD2Q14332 565 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PLCL1Q15111 1095 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 UAP1L1Q3KQV9 507 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 ZNF542PQ5EBM4 170 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PRRT3Q5FWE3 981 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 GKAP1Q5VSY0 366 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 METTL2BQ6P1Q9 378 aaKnown RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SBSNQ6UWP8 590 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 RGS9BPQ6ZS82 235 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 C11orf96Q7Z7L8 435 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 TBC1D21Q8IYX1 336 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SLC22A18ASQ8N1D0 253 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 LILRA3Q8N6C8 439 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SNX31Q8N9S9 440 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 CEP76Q8TAP6 659 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 LMX1AQ8TE12 382 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 DNASE2BQ8WZ79 361 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PIGKQ92643 395 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SH3KBP1Q96B97 665 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 L3HYPDHQ96EM0 354 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 TMEM237Q96Q45 408 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 HGH1Q9BTY7 390 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 TRIM55Q9BYV6 548 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 ILKAPQ9H0C8 392 aaPredicted RBP10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 TMEM168Q9H0V1 697 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 OR52A5Q9H2C5 316 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 MVB12BQ9H7P6 319 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 ABCF3Q9NUQ8 709 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 FGFR1OP2Q9NVK5 253 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PSD3Q9NYI0 1048 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 SLC23A2Q9UGH3 650 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 CDYLQ9Y232 598 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 PDE10AQ9Y233 779 aa10.02□□□□□ -0.81
PRPF38A-202ENST00000474048 ZFC3H1O60293 1989 aaKnown RBP10.01□□□□□ -0.81
PRPF38A-202ENST00000474048 BPTFQ12830 3046 aa10.01□□□□□ -0.81
PRPF38A-202ENST00000474048 OR5K4A6NMS3 321 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms