RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 LMNTD2Q8IXW0 634 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 SLC22A15Q8IZD6 547 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 LKAAEAR1Q8TD35 194 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 OR6C1Q96RD1 312 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 MAP3K3Q99759 626 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 TFB2MQ9H5Q4 396 aaKnown RBP13.82□□□□□ -0.2
VAMP4-203ENST00000474047 XKR8Q9H6D3 395 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 INTS10Q9NVR2 710 aaKnown RBP13.82□□□□□ -0.2
VAMP4-203ENST00000474047 FAM169AQ9Y6X4 670 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 ADAMTS20P59510 1910 aa13.82□□□□□ -0.2
VAMP4-203ENST00000474047 ZCWPW2A0A1B0GU75 182 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 ACADLP28330 430 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SHMT2P34897 504 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 ATP1A2P50993 1020 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 ARL4CP56559 192 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CLN3Q13286 438 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CTBP1Q13363 440 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 TGIF1Q15583 401 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 MANEAQ5SRI9 462 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 RASGRP3Q8IV61 690 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 BMPERQ8N8U9 685 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 BBOF1Q8ND07 529 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SPATA4Q8NEY3 305 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 OR5K2Q8NHB8 316 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 KLHL6Q8WZ60 621 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 LPGAT1Q92604 370 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FAM136AQ96C01 138 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 ELMO2Q96JJ3 720 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 C16orf45Q96MC5 204 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FOPNLQ96NB1 174 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 EBNA1BP2Q99848 306 aaKnown RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FAM167BQ9BTA0 163 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 PPANQ9NQ55 473 aaKnown RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SOHLH2Q9NX45 425 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FREM2Q5SZK8 3169 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 IGHV5-51A0A0C4DH38 117 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 C2orf74A8MZ97 194 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 GPC4O75487 556 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 BANF1O75531 89 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 PKMP14618 531 aaKnown RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 NELFEP18615 380 aaKnown RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 IVDP26440 423 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SH3BP2P78314 561 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 HSD11B2P80365 405 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 C2orf54Q08AI8 447 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CALCOCO2Q13137 446 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 HIF1AQ16665 826 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 HSP90AA5PQ58FG0 334 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SPANXN3Q5MJ09 141 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CTSL3PQ5NE16 218 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 HP1BP3Q5SSJ5 553 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 PLEKHS1Q5SXH7 462 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 TMTC4Q5T4D3 741 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 HIBCHQ6NVY1 386 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CCDC81Q6ZN84 652 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CENPUQ71F23 418 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 KCNMB4Q86W47 210 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 KMT5CQ86Y97 462 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 VRK3Q8IV63 474 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 DENND6AQ8IWF6 608 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 IL22RA1Q8N6P7 574 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 ZNF592Q92610 1267 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 PMEPA1Q969W9 287 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 TRIM44Q96DX7 344 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CFAP36Q96G28 342 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 BIRC8Q96P09 236 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 CCNL2Q96S94 520 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 APMAPQ9HDC9 416 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 PDE7BQ9NP56 450 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FBXO6Q9NRD1 293 aaPredicted RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 IARS2Q9NSE4 1012 aaKnown RBP13.81□□□□□ -0.2
VAMP4-203ENST00000474047 SNX24Q9Y343 169 aa13.81□□□□□ -0.2
VAMP4-203ENST00000474047 FAM187AA6NFU0 413 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 BTN3A3O00478 584 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 BTN3A1O00481 513 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 NIPSNAP2O75323 286 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 SLCO2B1O94956 709 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 ZBTB11O95625 1053 aaPredicted RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 S1PR4O95977 384 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 KPNA2P52292 529 aaKnown RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 ADARP55265 1226 aaKnown RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 MRPS25P82663 173 aaKnown RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 IL11RAQ14626 422 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 CRYMQ14894 314 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 AGGF1Q8N302 714 aaeCLIP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 COL26A1Q96A83 441 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 CRELD1Q96HD1 420 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 CPNE5Q9HCH3 593 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 ZC3H7BQ9UGR2 993 aaKnown RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 TSR3Q9UJK0 312 aaKnown RBP13.8□□□□□ -0.2
VAMP4-203ENST00000474047 FBXO5Q9UKT4 447 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 RARRES3Q9UL19 164 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 PLAGL1Q9UM63 463 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 MRFAP1Q9Y605 127 aa13.8□□□□□ -0.2
VAMP4-203ENST00000474047 PIPSLA2A3N6 862 aa13.79□□□□□ -0.2
VAMP4-203ENST00000474047 URI1O94763 535 aaPredicted RBP13.79□□□□□ -0.2
VAMP4-203ENST00000474047 SEC31AO94979 1220 aaKnown RBP13.79□□□□□ -0.2
VAMP4-203ENST00000474047 ERVK-10P10266 1014 aa13.79□□□□□ -0.2
VAMP4-203ENST00000474047 PRDX3P30048 256 aaKnown RBP13.79□□□□□ -0.2
VAMP4-203ENST00000474047 ELK3P41970 407 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms