RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CDH17Q12864 832 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 PRKG2Q13237 762 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 SEMA5AQ13591 1074 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 ITIH4Q14624 930 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 IZUMO3Q5VZ72 239 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 LCN10Q6JVE6 187 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 TCTN3Q6NUS6 607 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 SYVN1Q86TM6 617 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 AMIGO1Q86WK6 493 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 DSELQ8IZU8 1212 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 SPC24Q8NBT2 197 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 OR5AR1Q8NGP9 310 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 MR1Q95460 341 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 LRFN5Q96NI6 719 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 TRAPPC9Q96Q05 1148 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 TRIM55Q9BYV6 548 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 CHST8Q9H2A9 424 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 FANCEQ9HB96 536 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 TLK1Q9UKI8 766 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 C2orf74A8MZ97 194 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 TMEM150CB9EJG8 249 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 LIN7AO14910 233 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 ARHGAP6O43182 974 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 SUN1O94901 812 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 PDGFAP04085 211 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 TPBGLP0DKB5 382 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 PVRP15151 417 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 ACADLP28330 430 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 GRIA1P42261 906 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 LMAN1P49257 510 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 PLEKHS1Q5SXH7 462 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 CPZQ66K79 652 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 RNF10Q8N5U6 811 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 SEC14L1Q92503 715 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 CPT1BQ92523 772 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 KLHL25Q9H0H3 589 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 ETNK1Q9HBU6 452 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 ACTR10Q9NZ32 417 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 SLC2A6Q9UGQ3 507 aa18.21■□□□□ 0.51
CCDC88B-206ENST00000473405 NBPF19A0A087WUL8 3843 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 BHMG1C9JSJ3 638 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 MEN1O00255 615 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 FTH1P02794 183 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 CAPN1P07384 714 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 STIP1P31948 543 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 GSDMDP57764 484 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 RPS15P62841 145 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 ACVR1Q04771 509 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 KLRB1Q12918 225 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 IGFBP7Q16270 282 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 FAM69BQ5VUD6 431 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF449Q6P9G9 518 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 SPESP1Q6UW49 350 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 FAM198BQ6UWH4 519 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 NAPRTQ6XQN6 538 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 CDHR3Q6ZTQ4 885 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 PRUNE1Q86TP1 453 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 SLC13A5Q86YT5 568 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 DNAAF3Q8N9W5 541 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 GLIS1Q8NBF1 620 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 ADAMTS17Q8TE56 1095 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF778Q96MU6 729 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 ALS2CR12Q96Q35 445 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 SYTL2Q9HCH5 934 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 PCMTD2Q9NV79 361 aa18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 FARSAQ9Y285 508 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-206ENST00000473405 SLC5A10A0PJK1 596 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 HEATR9A2RTY3 570 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 QSOX1O00391 747 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 OR1I1O60431 355 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 IFNB1P01574 187 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ETS1P14921 441 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 CYP2A7P20853 494 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 FDFT1P37268 417 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 BRD3Q15059 726 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 SEL1L2Q5TEA6 688 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ASB18Q6ZVZ8 466 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ZNF534Q76KX8 674 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ENDOVQ8N8Q3 282 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 FLVCR1-AS1Q8TAF5 88 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 C1orf54Q8WWF1 131 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 THAP4Q8WY91 577 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ELMO1Q92556 727 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 HDAC10Q969S8 669 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 RANBP9Q96S59 729 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 FRMD8P1Q9BZ68 369 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 RIMKLBQ9ULI2 386 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 ASF1AQ9Y294 204 aa18.19■□□□□ 0.5
CCDC88B-206ENST00000473405 CCDC88CQ9P219 2028 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 CENPEQ02224 2701 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 CYSRT1A8MQ03 144 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 GOT2P00505 430 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 KLK3P07288 261 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 RAB40ALP0C0E4 278 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 UGT2B7P16662 529 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 SHMT2P34897 504 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 CHAF1BQ13112 559 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 SEMA3AQ14563 771 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 ZIC1Q15915 447 aa18.18■□□□□ 0.5
CCDC88B-206ENST00000473405 TSTD2Q5T7W7 516 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms