RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 Q6ZVU0 165 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 MSRB3Q8IXL7 192 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 MRPS31Q92665 395 aaKnown RBP18.69■□□□□ 0.58
VIM-203ENST00000469543 GTF2H4Q92759 462 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 ULK4Q96C45 1275 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 NSMCE2Q96MF7 247 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 HPS4Q9NQG7 708 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 SPG21Q9NZD8 308 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 HSFX1Q9UBD0 423 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 PDE10AQ9Y233 779 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 HCFC2Q9Y5Z7 792 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 CCL16O15467 120 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 FKTNO75072 461 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 RASAL1O95294 804 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 EPB42P16452 691 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 RPS3P23396 243 aaKnown RBP eCLIP18.68■□□□□ 0.586e-7■□□□□ 10.4
VIM-203ENST00000469543 WEE1P30291 646 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 PPP3CCP48454 512 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 B3GNT6Q6ZMB0 384 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 DPP10Q8N608 796 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 MFSD2AQ8NA29 543 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 SLC13A3Q8WWT9 602 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 TCEAL4Q96EI5 215 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 SCRN2Q96FV2 425 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 LINC00597Q9H2U6 94 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 PFDN4Q9NQP4 134 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 PAK6Q9NQU5 681 aaPredicted RBP18.68■□□□□ 0.58
VIM-203ENST00000469543 KIAA1522Q9P206 1035 aaPredicted RBP18.68■□□□□ 0.58
VIM-203ENST00000469543 LSM7Q9UK45 103 aaKnown RBP18.68■□□□□ 0.58
VIM-203ENST00000469543 FADS3Q9Y5Q0 445 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 K7EPI3 171 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 CLOCKO15516 846 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 STK16O75716 305 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 IGSF6O95976 241 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 PDYNP01213 254 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 HTR1EP28566 365 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 SF1Q15637 639 aaKnown RBP18.68■□□□□ 0.58
VIM-203ENST00000469543 MAPKAPK3Q16644 382 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 IMPG1Q17R60 797 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 HTR3DQ70Z44 454 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 OTOP2Q7RTS6 562 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 SPRED1Q7Z699 444 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 NAT16Q8N8M0 369 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 FIBINQ8TAL6 211 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 HTATIP2Q9BUP3 242 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 C9orf16Q9BUW7 83 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 ATG10Q9H0Y0 220 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 VCX3AQ9NNX9 186 aa18.68■□□□□ 0.58
VIM-203ENST00000469543 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.68■□□□□ 0.58
VIM-203ENST00000469543 PRAMEF4O60810 478 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 SH3BGRLO75368 114 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 LDLRP01130 860 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 PGRP06401 933 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ITPKAP23677 461 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 RPS9P46781 194 aaKnown RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 MNX1P50219 401 aaPredicted RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 CRY1Q16526 586 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 PRAMEF9Q5VWM5 478 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 MACC1Q6ZN28 852 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ANKRD33Q7Z3H0 272 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ITIH5Q86UX2 942 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 TMC8Q8IU68 726 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ACPTQ9BZG2 426 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 SUV39H2Q9H5I1 410 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ACTR8Q9H981 624 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 NDUFA13Q9P0J0 144 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 DMTF1Q9Y222 760 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 NEDD8-MDP1E9PL57 170 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 H0Y858 1186 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 UPK1AO00322 258 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 MANBAO00462 879 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 GNPDA1P46926 289 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 MRPL19P49406 292 aaKnown RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 VEGFBP49765 207 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 PWP1Q13610 501 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 GCNT7Q6ZNI0 430 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 DDX53Q86TM3 631 aaKnown RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 FAM217AQ8IXS0 508 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ST13P5Q8NFI4 369 aaPredicted RBP18.67■□□□□ 0.58
VIM-203ENST00000469543 ITFG1Q8TB96 612 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 TSSK3Q96PN8 268 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 DPY30Q9C005 99 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 TMEM39AQ9NV64 488 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 JAK1P23458 1154 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 MPPE1Q53F39 396 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 TMTC4Q5T4D3 741 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 SULT1C3Q6IMI6 304 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 RIMKLAQ8IXN7 391 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 ZNF366Q8N895 744 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 OR52E6Q96RD3 313 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 COPS8Q99627 209 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 P2RY13Q9BPV8 354 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 BRD9Q9H8M2 597 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 LRTM1Q9HBL6 345 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 THEGQ9P2T0 379 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 SLC22A14Q9Y267 594 aa18.67■□□□□ 0.58
VIM-203ENST00000469543 RGS14O43566 566 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 RFPL2O75678 378 aa18.66■□□□□ 0.58
VIM-203ENST00000469543 KCNH1O95259 989 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms