RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 C1QCP02747 245 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 RAP2AP10114 183 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 CDH1P12830 882 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 HSPA7P48741 367 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 ADPRMQ3LIE5 342 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 SPANXN4Q5MJ08 99 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 CATSPEREQ5SY80 951 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 LHX8Q68G74 356 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 NADSYN1Q6IA69 706 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 FBXL22Q6P050 247 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 LPCAT1Q8NF37 534 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 OR7D4Q8NG98 312 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 SLC35B4Q969S0 331 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 BTN2A3PQ96KV6 586 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 ATP13A3Q9H7F0 1226 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 FBXO10Q9UK96 956 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 NOD1Q9Y239 953 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 LOC100506127A0A0U1RQW1 187 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TRIM64CA6NLI5 447 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SLC1A7O00341 560 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 AQP9O43315 295 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 RAMP2O60895 175 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SEC24AO95486 1093 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 DBTP11182 482 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 BMP4P12644 408 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TCEA1P23193 301 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 CASP9P55211 416 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GP2P55259 537 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 RING1Q06587 406 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ABRAXAS2Q15018 415 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SF3B4Q15427 424 aaKnown RBP eCLIP12.2□□□□□ -0.463e-7■■■■■ 39.3
HDAC4-208ENST00000463007 KCNJ8Q15842 424 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 PSAPL1Q6NUJ1 521 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GLT6D1Q7Z4J2 308 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 PLD3Q8IV08 490 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SYTL1Q8IYJ3 562 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ZNF540Q8NDQ6 660 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ZNF347Q96SE7 839 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GPR62Q9BZJ7 368 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ELAC1Q9H777 363 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TMEM161AQ9NX61 479 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GIN1Q9NXP7 522 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 WDR37Q9Y2I8 494 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ANGPTL3Q9Y5C1 460 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 PCDHB5Q9Y5E4 795 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TPD52L2O43399 206 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ABCB1P08183 1280 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GTF2E2P29084 291 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 HK3P52790 923 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ERVK-8P63133 956 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SERINC3Q13530 473 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 CRY1Q16526 586 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 MAPKAPK3Q16644 382 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TCTN1Q2MV58 587 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 COLEC12Q5KU26 742 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 C10orf120Q5SQS8 335 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TTC23Q5W5X9 447 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SLC16A12Q6ZSM3 486 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 USP51Q70EK9 711 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 AHSA2Q719I0 299 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ATAD1Q8NBU5 361 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ZNF599Q96NL3 588 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 CASD1Q96PB1 797 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 AARSD1Q9BTE6 412 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ROGDIQ9GZN7 287 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TRMT6Q9UJA5 497 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 CAB39Q9Y376 341 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 MYO10Q9HD67 2058 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SEC22BO75396 215 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 EEDO75530 441 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 PRSS23O95084 383 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 MATN4O95460 622 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SERPINA1P01009 418 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 FGF4P08620 206 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ATP4BP51164 291 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 DGKEP52429 567 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 STC1P52823 247 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GALNT1Q10472 559 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ZNF846Q147U1 533 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SKIV2LQ15477 1246 aaKnown RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GTF2IRD2BQ6EKJ0 949 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 NANOGNBQ7Z5D8 188 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 GTF2IRD2Q86UP8 949 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 C10orf111Q8N326 155 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 TERB1Q8NA31 727 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 OR56A4Q8NGH8 313 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SKA2Q8WVK7 121 aaPredicted RBP12.2□□□□□ -0.46
HDAC4-208ENST00000463007 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.2□□□□□ -0.468e-6■■■□□ 15.7
HDAC4-208ENST00000463007 SLC52A3Q9NQ40 469 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SLC6A13Q9NSD5 602 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 SLCO3A1Q9UIG8 710 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 FKBPLQ9UIM3 349 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 ORC6Q9Y5N6 252 aa12.2□□□□□ -0.46
HDAC4-208ENST00000463007 PLXNA4Q9HCM2 1894 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 MTMR11A4FU01 709 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 OR6C75A6NL08 312 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 NBNO60934 754 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 CPNE6O95741 557 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 MLYCDO95822 493 aa12.19□□□□□ -0.46
HDAC4-208ENST00000463007 PSMA3P25788 255 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms