RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CREG1O75629 220 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ABCB1P08183 1280 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 MMP2P08253 660 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 IL1RNP18510 177 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 GADD45AP24522 165 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CCR1P32246 355 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CYP2C18P33260 490 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 S100A5P33763 92 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 DDOSTP39656 456 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ETV6P41212 452 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CD86P42081 329 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 MAGEA2P43356 314 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ZNF280AP59817 542 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 MRPS15P82914 257 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 LAPTM4AQ15012 233 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 RBBP7Q16576 425 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CARD16Q5EG05 197 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 SNAP47Q5SQN1 464 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ZCCHC8Q6NZY4 707 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 PAQR3Q6TCH7 311 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 GPRIN3Q6ZVF9 776 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 AHSA2Q719I0 299 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CEP68Q76N32 757 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CDYL2Q8N8U2 506 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 DCBLD1Q8N8Z6 715 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 GPR150Q8NGU9 434 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 IPCEF1Q8WWN9 437 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 SLC13A3Q8WWT9 602 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 APOL4Q9BPW4 351 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ARPC5LQ9BPX5 153 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 TMEM246Q9BRR3 403 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 TBCDQ9BTW9 1192 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CCDC59Q9P031 241 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 SNX6Q9UNH7 406 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 BOLA1Q9Y3E2 137 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 ANKRD36A6QL64 1941 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 A0A0U1RQS6 177 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 LCHNA4D1U4 455 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 NCF1BA6NI72 391 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 NCF1CA8MVU1 366 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 AP3D1O14617 1153 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 FGF10O15520 208 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 SEC22BO75396 215 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 SEMA3DO95025 777 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 MED26O95402 600 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 GLP2RO95838 553 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 SERPINA1P01009 418 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 APOA1P02647 267 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 SERPINF2P08697 491 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 NCF1P14598 390 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 EPHA2P29317 976 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 HOXA9P31269 272 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CTSKP43235 329 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 LIMK1P53667 647 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 MAXP61244 160 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 EIF4EBP2Q13542 120 aaPredicted RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 PTPRCAPQ14761 206 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 SIRPB2Q5JXA9 342 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 PRAMEF18Q5VWM3 479 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 GALNT12Q8IXK2 581 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 OR56A4Q8NGH8 313 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 TBC1D20Q96BZ9 403 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 DEPDC7Q96QD5 511 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 REXO4Q9GZR2 422 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 EHD3Q9NZN3 535 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 WBP11Q9Y2W2 641 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 CENPXA8MT69 81 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 E2F3O00716 465 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 IGLV3-25P01717 112 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 NAT1P18440 290 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 IGFBP6P24592 240 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 HMGB2P26583 209 aaKnown RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 GRK5P34947 590 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 MAGEA11P43364 429 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 HTR6P50406 440 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 ERVPABLB-1P60509 514 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 GPR50Q13585 617 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 PROX2Q3B8N5 592 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 C14orf80Q86SX3 495 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 TSPYL5Q86VY4 417 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 OR52B6Q8NGF0 335 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 NETO1Q8TDF5 533 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 APH1BQ8WW43 257 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 RASSF5Q8WWW0 418 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 FCGR1BQ92637 280 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 UBE2FQ969M7 185 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 ESAMQ96AP7 390 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 PCED1BQ96HM7 432 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 EGLN2Q96KS0 407 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 CDK15Q96Q40 435 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 CLPBQ9H078 707 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 NUAK2Q9H093 628 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 CATSPERBQ9H7T0 1116 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 SYTL2Q9HCH5 934 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 PLSCR3Q9NRY6 295 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.49□□□□□ -0.73
USP54-204ENST00000422491 MKLN1Q9UL63 735 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-204ENST00000422491 GPSM3Q9Y4H4 160 aa10.49□□□□□ -0.73
USP54-204ENST00000422491 POLR3HQ9Y535 204 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms