RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GIPC1O14908 333 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 SCAMP1O15126 338 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 MTHFD2P13995 350 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 CTSEP14091 401 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 DRD4P21917 467 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 MAOBP27338 520 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 HALP42357 657 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 BDKRB1P46663 353 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 HNMTP50135 292 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 CLCNKAP51800 687 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 HK3P52790 923 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 ILF3Q12906 894 aaKnown RBP eCLIP16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 KRT33BQ14525 404 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 IQCHQ86VS3 1027 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 PARGQ86W56 976 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 FBXL6Q8N531 539 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 TMEM105Q8N8V8 129 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 ATL1Q8WXF7 558 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 TRMOQ9BU70 441 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 DRC3Q9H069 523 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 WWP1Q9H0M0 922 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 OR52A5Q9H2C5 316 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 TM9SF3Q9HD45 589 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 GULP1Q9UBP9 304 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 ASF1AQ9Y294 204 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 SPTY2D1-AS1A0A0U1RR47 76 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 KLK8O60259 260 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 SNNO75324 88 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 LYPLA1O75608 230 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 FUCA1P04066 466 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 RPL10P27635 214 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 DHPSP49366 369 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 C21orf59P57076 290 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 OCRLQ01968 901 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TERF2Q15554 542 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TEAD4Q15561 434 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 RBBP7Q16576 425 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TPRG1LQ5T0D9 272 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 GKAP1Q5VSY0 366 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 LYSMD4Q5XG99 296 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 FRMD7Q6ZUT3 714 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 KIRREL3Q8IZU9 778 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC22A18ASQ8N1D0 253 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 GAB3Q8WWW8 586 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TFGQ92734 400 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 CCDC138Q96M89 665 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 ORAI3Q9BRQ5 295 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TRIM55Q9BYV6 548 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 ILKAPQ9H0C8 392 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 TRNAU1APQ9NX07 287 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 FBXO4Q9UKT5 387 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 DGKBQ9Y6T7 804 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 ABCA7Q8IZY2 2146 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 WDFY4Q6ZS81 3184 aa16.71■□□□□ 0.27
CCDC28B-202ENST00000421922 ZDBF2Q9HCK1 2354 aa16.71■□□□□ 0.26
CCDC28B-202ENST00000421922 ARHGEF33A8MVX0 844 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 CCNT2O60583 730 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 SIX3O95343 332 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ARL1P40616 181 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ACTR1BP42025 376 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 PIK3CGP48736 1102 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ACTR1AP61163 376 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 CTBSQ01459 385 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 PRKAA1Q13131 559 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 CEP68Q76N32 757 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 DCUN1D3Q8IWE4 304 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 RAB42Q8N4Z0 105 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF473Q8WTR7 871 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 DLG3Q92796 817 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 C12orf66Q96MD2 445 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ELAC2Q9BQ52 826 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 GSDMCQ9BYG8 508 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TRIT1Q9H3H1 467 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ACSS2Q9NR19 701 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 OPTCQ9UBM4 332 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 STK38LQ9Y2H1 464 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 PLEKHM1Q9Y4G2 1056 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 HEBP2Q9Y5Z4 205 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TLR4O00206 839 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 BCAT2O15382 392 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ITM2AO43736 263 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 KDM1AO60341 852 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 CRCPO75575 148 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 C1orf105O95561 183 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 RPS17P08708 135 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TDGF1P13385 188 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 GNSP15586 552 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 HSPA7P48741 367 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 AGTR2P50052 363 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 FZD2Q14332 565 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TCEA2Q15560 299 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 UNC50Q53HI1 259 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ARL13AQ5H913 290 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 SLC30A9Q6PML9 568 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 MBOAT1Q6ZNC8 495 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 SPATA21Q7Z572 469 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 WDR75Q8IWA0 830 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 PHACTR4Q8IZ21 702 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 FBXO15Q8NCQ5 510 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 UBTD2Q8WUN7 234 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms