RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ATP5DP30049 168 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 BDKRB1P46663 353 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 LIMK2P53671 638 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 CDKN2DP55273 166 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 ZFP36L1Q07352 338 aaKnown RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 ABRQ12979 859 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 SQSTM1Q13501 440 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 C16orf72Q14CZ0 275 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 EFTUD2Q15029 972 aaKnown RBP eCLIP12.14□□□□□ -0.47
SKA1-203ENST00000417656 TTLL9Q3SXZ7 439 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 ACSBG2Q5FVE4 666 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 TMEM71Q6P5X7 295 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 WDR74Q6RFH5 385 aaPredicted RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 UNC5DQ6UXZ4 953 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 C3orf62Q6ZUJ4 267 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 STRA8Q7Z7C7 330 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 SLC26A11Q86WA9 606 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 GSPT2Q8IYD1 628 aaKnown RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 CPNE9Q8IYJ1 553 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 TBC1D21Q8IYX1 336 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 RCBTB1Q8NDN9 531 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 NXPE2Q96DL1 559 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 LIN37Q96GY3 246 aaPredicted RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 TGM7Q96PF1 710 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 DPYSL5Q9BPU6 564 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 STRADBQ9C0K7 418 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 XKR8Q9H6D3 395 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 LRRC4CQ9HCJ2 640 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 NINJ2Q9NZG7 142 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 CIDEBQ9UHD4 219 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 TRMT6Q9UJA5 497 aaKnown RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 PLAGL1Q9UM63 463 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 NFU1Q9UMS0 254 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 SATB2Q9UPW6 733 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 ICKQ9UPZ9 632 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 TDRKHQ9Y2W6 561 aaKnown RBP12.14□□□□□ -0.47
SKA1-203ENST00000417656 CEP295Q9C0D2 2601 aa12.14□□□□□ -0.47
SKA1-203ENST00000417656 CCDC187A0A096LP49 1063 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 KRT87PA6NCN2 255 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 OR6C74A6NCV1 312 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 OR5K3A6NET4 321 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 TRABD2BA6NFA1 517 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 FAM159BA6NKW6 160 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 C1QTNF9BB2RNN3 333 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 C1QAP02745 245 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 MPOP05164 745 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 C1QTNF9P0C862 333 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 HGFP14210 728 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 MCM3P25205 808 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 STX2P32856 288 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 PGGT1BP53609 377 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 GABREP78334 506 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 TIAL1Q01085 375 aaKnown RBP eCLIP12.13□□□□□ -0.47
SKA1-203ENST00000417656 HECTD2Q5U5R9 776 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 IRGCQ6NXR0 463 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 FOXR1Q6PIV2 292 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 UNQ6494/PRO21346Q6UXR6 183 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 CEP128Q6ZU80 1094 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 ZC3HC1Q86WB0 502 aaKnown RBP12.13□□□□□ -0.47
SKA1-203ENST00000417656 OOSP2Q86WS3 158 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 PLXDC1Q8IUK5 500 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 DCUN1D3Q8IWE4 304 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 IFT20Q8IY31 132 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 OR4E2Q8NGC2 313 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 OR5K2Q8NHB8 316 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 FBF1Q8TES7 1133 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 ZFPM2Q8WW38 1151 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 LCN9Q8WX39 176 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 CDKL2Q92772 493 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 OLFM1Q99784 485 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 CDC42EP4Q9H3Q1 356 aaKnown RBP12.13□□□□□ -0.47
SKA1-203ENST00000417656 SRMSQ9H3Y6 488 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 LATS2Q9NRM7 1088 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 NSMCE4AQ9NXX6 385 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 CORO1CQ9ULV4 474 aaPredicted RBP12.13□□□□□ -0.47
SKA1-203ENST00000417656 DHRS7Q9Y394 339 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 LOXL2Q9Y4K0 774 aa12.13□□□□□ -0.47
SKA1-203ENST00000417656 FAM95CA0A1B0GW59 222 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 A8MU76 341 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 TMX2-CTNND1H3BSU7 103 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 BTN3A1O00481 513 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 CAPN5O15484 640 aaPredicted RBP12.12□□□□□ -0.47
SKA1-203ENST00000417656 SPAG6O75602 509 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 C9P02748 559 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 RPN2P04844 631 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 TPBGLP0DKB5 382 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 POLR2CP19387 275 aaPredicted RBP12.12□□□□□ -0.47
SKA1-203ENST00000417656 FDXRP22570 491 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 KYNUQ16719 465 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 KLHL38Q2WGJ6 581 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 KBTBD12Q3ZCT8 623 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 FAM45BPQ6NSW5 357 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 KLHL35Q6PF15 583 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 FAM92BQ6ZTR7 304 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 RAB11FIP2Q7L804 512 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 PIWIL4Q7Z3Z4 852 aaKnown RBP12.12□□□□□ -0.47
SKA1-203ENST00000417656 CTAGE3PQ8IX95 158 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 WDR36Q8NI36 951 aaKnown RBP12.12□□□□□ -0.47
SKA1-203ENST00000417656 MDM1Q8TC05 714 aa12.12□□□□□ -0.47
SKA1-203ENST00000417656 FAM45AQ8TCE6 357 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms