RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 FAM45BPQ6NSW5 357 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 IL27RAQ6UWB1 636 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF784Q8NCA9 323 aaPredicted RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 OR13J1Q8NGT2 312 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 FAM45AQ8TCE6 357 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 UTP15Q8TED0 518 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 TBATAQ96M53 351 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 TSEN34Q9BSV6 310 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 GALPQ9UBC7 116 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 BTBD3Q9Y2F9 522 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 IFT52Q9Y366 437 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 PCDHB5Q9Y5E4 795 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 BTN3A1O00481 513 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 AIREO43918 545 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 RAB15P59190 212 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 AGAP7PQ5VUJ5 663 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 BHLHA9Q7RTU4 235 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 HIPK1Q86Z02 1210 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ELMOD2Q8IZ81 293 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 DCP1BQ8IZD4 617 aaKnown RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 FBXO39Q8N4B4 442 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 PACRGLQ8N7B6 248 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 OR2T12Q8NG77 320 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 DACT3Q96B18 629 aaPredicted RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 ROPN1LQ96C74 230 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 MEAF6Q9HAF1 191 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 CASS4Q9NQ75 786 aa12.73□□□□□ -0.37
PTPRN-202ENST00000409251 POLR3HQ9Y535 204 aaPredicted RBP12.73□□□□□ -0.37
PTPRN-202ENST00000409251 CNPP09543 421 aaKnown RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 MYCLP1P12525 358 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 SLC2A4P14672 509 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 GRK3P35626 688 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 CD86P42081 329 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 LEPRP48357 1165 aaKnown RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TBX4P57082 545 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 FAM189BP81408 668 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 IFITM2Q01629 132 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 GALNT2Q10471 571 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 DPY19L1Q2PZI1 675 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 GTDC1Q4AE62 458 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TECRLQ5HYJ1 363 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 SPANXN2Q5MJ10 180 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 Q6ZPB1 254 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 LARP4Q71RC2 724 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 EID3Q8N140 333 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 KCTD13Q8WZ19 329 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TOP1MTQ969P6 601 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 PTERQ96BW5 349 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 SLC47A1Q96FL8 570 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 SLC2A13Q96QE2 648 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 AMBRA1Q9C0C7 1298 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TMEM39AQ9NV64 488 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 MARCH2Q9P0N8 246 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 KIAA1522Q9P206 1035 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 MARCH4Q9P2E8 410 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 FAM8A1Q9UBU6 413 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 ENPP5Q9UJA9 477 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 KLHL20Q9Y2M5 609 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 HS3ST4Q9Y661 456 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 USP3Q9Y6I4 520 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 LOC110117498-PIK3R3F6TDL0 507 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 PRMT5O14744 637 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 DFNA5O60443 496 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TNFRSF21O75509 655 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 LRATO95237 230 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 ANXA6P08133 673 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TSNQ15631 228 aaKnown RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 GPR153Q6NV75 609 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 FAM171BQ6P995 826 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 C11orf74Q86VG3 221 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 TMEM125Q96AQ2 219 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 ZNF419Q96HQ0 510 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-202ENST00000409251 VAT1Q99536 393 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 COPS4Q9BT78 406 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 PRKAB1Q9Y478 270 aa12.72□□□□□ -0.37
PTPRN-202ENST00000409251 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 MAGEB16A2A368 324 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 DCLK1O15075 740 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 SLC22A2O15244 555 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 OR4F21O95013 312 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 GJB5O95377 273 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 IGHA2P01877 340 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 HAPLN1P10915 354 aaPredicted RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 CCL5P13501 91 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 PLD1Q13393 1074 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 PTPRRQ15256 657 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 UNC50Q53HI1 259 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 EFL1Q7Z2Z2 1120 aaKnown RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 ASCC1Q8N9N2 400 aaKnown RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 GSTO2Q9H4Y5 243 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 TOR4AQ9NXH8 423 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 AFF4Q9UHB7 1163 aaKnown RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 EIF3LQ9Y262 564 aaKnown RBP12.71□□□□□ -0.37
PTPRN-202ENST00000409251 IRAK2O43187 625 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 TLR5O60602 858 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 SCO1O75880 301 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 KCNK2O95069 426 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 ITIH1P19827 911 aa12.71□□□□□ -0.37
PTPRN-202ENST00000409251 TGM1P22735 817 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms