RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CDH18Q13634 790 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 LAPTM4AQ15012 233 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 FAM98BQ52LJ0 330 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 ADGRF1Q5T601 910 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 IGFN1Q86VF2 1251 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 C8orf59Q8N0T1 100 aaPredicted RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 C10orf111Q8N326 155 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 CHDHQ8NE62 594 aaPredicted RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 FRS2Q8WU20 508 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 IGSF21Q96ID5 467 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 THUMPD3Q9BV44 507 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 FUNDC2Q9BWH2 189 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 C1QTNF3Q9BXJ4 246 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 SMG9Q9H0W8 520 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 TNKS2Q9H2K2 1166 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 ZFP14Q9HCL3 533 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 SLC6A13Q9NSD5 602 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 TRNAU1APQ9NX07 287 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 FBXO10Q9UK96 956 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 TYW5A2RUC4 315 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 H3BNC9 293 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 CBFA2T3O75081 653 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 INMTO95050 263 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 PRSS23O95084 383 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 B3GALT4O96024 378 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 CST1P01037 141 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 EPOP01588 193 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 HTR1BP28222 390 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 OPRL1P41146 370 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 TMBIM6P55061 237 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 ARF5P84085 180 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 HMGCS1Q01581 520 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 GRIK2Q13002 908 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 VEPH1Q14D04 833 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 GRAMD4Q6IC98 578 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 GOLGA7Q7Z5G4 137 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 NKAPQ8N5F7 415 aaKnown RBP15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 DPP10Q8N608 796 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 KRTCAP2Q8N6L1 136 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 PEX13Q92968 403 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 PPP1R14BQ96C90 147 aa15.96■□□□□ 0.15
NKX3-1-201ENST00000380871 KDELR3O43731 214 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 LPOP22079 712 aaPredicted RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CD47Q08722 323 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 KCNAB2Q13303 367 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 SGO1Q5FBB7 561 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 FAM151BQ6UXP7 276 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 OR2T12Q8NG77 320 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 PXYLP1Q8TE99 480 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 AURKBQ96GD4 344 aaPredicted RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ZNF382Q96SR6 550 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TUBA1CQ9BQE3 449 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 MGME1Q9BQP7 344 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TDRD1Q9BXT4 1180 aaKnown RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 NSUN3Q9H649 340 aaKnown RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TMEM9Q9P0T7 183 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 MTRRQ9UBK8 725 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ADGRE2Q9UHX3 823 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 PSME2Q9UL46 239 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 A0A1B0GVM2 712 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 HOXA2O43364 376 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CLPXO76031 633 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CKMP06732 381 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ALDH4A1P30038 563 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CSKP41240 450 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 FAM174BQ3ZCQ3 159 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 EGFLAMQ63HQ2 1017 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 SLC16A12Q6ZSM3 486 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ZBTB8BQ8NAP8 495 aaPredicted RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ZNF461Q8TAF7 563 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 HEBP1Q9NRV9 189 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 PRKD3O94806 890 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 SLC2A4P14672 509 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 PORP16435 677 aaPredicted RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 RXRGP48443 463 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 HSPA7P48741 367 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 MRPL19P49406 292 aaKnown RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TRIM60Q495X7 471 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 LRRC73Q5JTD7 316 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TXNDC11Q6PKC3 985 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CLDN19Q8N6F1 224 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 TERB1Q8NA31 727 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 YTHDF1Q9BYJ9 559 aaKnown RBP15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 CCDC90BQ9GZT6 254 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 COMMD8Q9NX08 183 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 SLC25A37Q9NYZ2 338 aa15.95■□□□□ 0.14
NKX3-1-201ENST00000380871 ANKRD66B4E2M5 251 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 CFAP99D6REC4 459 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 GSTA4O15217 222 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 SMAD6O43541 496 aaKnown RBP15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 XPNPEP2O43895 674 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 ADAM23O75077 832 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 SULT1C4O75897 302 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 CA5AP35218 305 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 BCAP31P51572 246 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 CBX2Q14781 532 aaPredicted RBP15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 TAF1AQ15573 450 aaPredicted RBP15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 C6orf141Q5SZD1 244 aa15.94■□□□□ 0.14
NKX3-1-201ENST00000380871 MSRB3Q8IXL7 192 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms