RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 DDX39BQ13838 428 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 CPSF6Q16630 551 aaKnown RBP eCLIP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 WSCD2Q2TBF2 565 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 GALNT4Q8N4A0 578 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 FNDC5Q8NAU1 212 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 BHLHE22Q8NFJ8 381 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 FIBINQ8TAL6 211 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 DNAJB14Q8TBM8 379 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 DNAJC9Q8WXX5 260 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 TIFAQ96CG3 184 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 LRRC3Q9BY71 257 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 CDK2AP1O14519 115 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 KIAA0355O15063 1070 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 ALDOCP09972 364 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 LINGO3P0C6S8 592 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 UBTFL6P0CB48 400 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 ANPEPP15144 967 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 PSMC3P17980 439 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 HTR6P50406 440 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 AP1S1P61966 158 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 YBX1P67809 324 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 SLC34A1Q06495 639 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 PPIGQ13427 754 aaKnown RBP eCLIP10.61□□□□□ -0.714e-10■□□□□ 8.9
NEDD9-201ENST00000379433 NFE2L1Q14494 772 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 IZUMO2Q6UXV1 221 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 BNC2Q6ZN30 1099 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 SYVN1Q86TM6 617 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 CLYBLQ8N0X4 340 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 UTP15Q8TED0 518 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 KIAA1191Q96A73 305 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 OCEL1Q9H607 264 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 SYNDIG1Q9H7V2 258 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 EFCAB1Q9HAE3 211 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 NTN4Q9HB63 628 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 INTS10Q9NVR2 710 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 APBB3O95704 486 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 CAPN1P07384 714 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 SLC6A11P48066 632 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 MS4A2Q01362 244 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 HMGCS1Q01581 520 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 CAMK1Q14012 370 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 GRIN2CQ14957 1233 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 METTL3Q86U44 580 aaKnown RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 STK32CQ86UX6 486 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 C12orf40Q86WS4 652 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 C2orf73Q8N5S3 287 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 LILRA3Q8N6C8 439 aaPredicted RBP10.61□□□□□ -0.71
NEDD9-201ENST00000379433 TUBB1Q9H4B7 451 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 ASB3Q9Y575 518 aa10.61□□□□□ -0.71
NEDD9-201ENST00000379433 VPS13AQ96RL7 3174 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 OTOL1A6NHN0 477 aaPredicted RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 NOTOA8MTQ0 251 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 E7ENX8 843 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 KERAO60938 352 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 MT-ND1P03886 318 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ZCCHC18P0CG32 403 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 NDUFV2P19404 249 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ITPKAP23677 461 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 PTGER3P43115 390 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 CSRP3P50461 194 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ACVR1Q04771 509 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ABRQ12979 859 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 CSTF3Q12996 717 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 GRM2Q14416 872 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 TBCCQ15814 346 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 TYSND1Q2T9J0 566 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 AARS2Q5JTZ9 985 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 USP45Q70EL2 814 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 LPCAT2Q7L5N7 544 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ZNF554Q86TJ5 538 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ALDH16A1Q8IZ83 802 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 SLC22A15Q8IZD6 547 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 FBXW8Q8N3Y1 598 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 RNF175Q8N4F7 328 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 GDPD5Q8WTR4 605 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 PPWD1Q96BP3 646 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 COPS7BQ9H9Q2 264 aaPredicted RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 EBF2Q9HAK2 575 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 DUS2Q9NX74 493 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 KLQ9UEF7 1012 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 MRASO14807 208 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ACTR3P61158 418 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 SLC7A9P82251 487 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 PTSQ03393 145 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 CEACAM7Q14002 265 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ACOX1Q15067 660 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 NR6A1Q15406 480 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 TRMT5Q32P41 509 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ALG1LQ6GMV1 187 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 NKAPQ8N5F7 415 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 UCMAQ8WVF2 138 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ULK4Q96C45 1275 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 TEX37Q96LM6 180 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 SMAD5Q99717 465 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 STN1Q9H668 368 aaKnown RBP10.6□□□□□ -0.71
NEDD9-201ENST00000379433 IPPKQ9H8X2 491 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 CRLF2Q9HC73 371 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 ARL15Q9NXU5 204 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 SLCO1B7G3V0H7 640 aa10.6□□□□□ -0.71
NEDD9-201ENST00000379433 YKT6O15498 198 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms