RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 AKAP9Q99996 3911 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 PCSK5Q92824 1860 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 SEC16AO15027 2179 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 ADGRG4Q8IZF6 3080 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 PIKFYVEQ9Y2I7 2098 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 DIDO1Q9BTC0 2240 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 C2orf81A6NN90 581 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 CFAP99D6REC4 459 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 BUD23O43709 281 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 STSP08842 583 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 GRNP28799 593 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 CD151P48509 253 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 NR2C2P49116 596 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 CDC16Q13042 620 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 PRKD1Q15139 912 aaPredicted RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 ZXDCQ2QGD7 858 aaPredicted RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 ANO6Q4KMQ2 910 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 C1orf189Q5VU69 101 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 AGAP7PQ5VUJ5 663 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 MRPL14Q6P1L8 145 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 TLDC1Q6P9B6 456 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 SPESP1Q6UW49 350 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 IGFL2Q6UWQ7 119 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 NPNTQ6UXI9 565 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 RFX6Q8HWS3 928 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 C19orf47Q8N9M1 422 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 OR52E1Q8NGJ3 308 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 DNAJB14Q8TBM8 379 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 TFB1MQ8WVM0 346 aaKnown RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 IQCDQ96DY2 449 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 MRGPRX2Q96LB1 330 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 NAP1L5Q96NT1 182 aaPredicted RBP13.38□□□□□ -0.27
VPS29-201ENST00000360579 AGAP4Q96P64 663 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 KLHL25Q9H0H3 589 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 ASB8Q9H765 288 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 VPS37BQ9H9H4 285 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 ACTR10Q9NZ32 417 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 COPG2Q9UBF2 871 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 ZFHX3Q15911 3703 aa13.38□□□□□ -0.27
VPS29-201ENST00000360579 SPTBP11277 2137 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 C3orf70A6NLC5 250 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 ZSCAN9O15535 394 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 SRP72O76094 671 aaKnown RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 SERPINC1P01008 464 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 PVRP15151 417 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 NFKB1P19838 968 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 CD68P34810 354 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 CHRNA4P43681 627 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 PRLHRP49683 370 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 ZBED6P86452 979 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 TYRO3Q06418 890 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 MPP3Q13368 585 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 ART3Q13508 389 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 ZNF169Q14929 603 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 NR1I3Q14994 352 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 TLR1Q15399 786 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 HIF1AQ16665 826 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 NKAIN1Q4KMZ8 207 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 PRAMEF13Q5VWM6 474 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 FAM180AQ6UWF9 173 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 DAAM2Q86T65 1068 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 IPMKQ8NFU5 416 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 ULK4Q96C45 1275 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 VPS50Q96JG6 964 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 FCRL5Q96RD9 977 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 VAT1Q99536 393 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 FSD1LQ9BXM9 530 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 DEF6Q9H4E7 631 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 EPS8L2Q9H6S3 715 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 KLHL8Q9P2G9 620 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 CRLS1Q9UJA2 301 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 CDYLQ9Y232 598 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 KLF2Q9Y5W3 355 aaPredicted RBP13.37□□□□□ -0.27
VPS29-201ENST00000360579 F8P00451 2351 aa13.37□□□□□ -0.27
VPS29-201ENST00000360579 CELSR1Q9NYQ6 3014 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 CROCCQ5TZA2 2017 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 H3BMH7 237 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 SGTAO43765 313 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 UMODP07911 640 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 MMP11P24347 488 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 PTGER4P35408 488 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 DYNLT1P63172 113 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 WASHC5Q12768 1159 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 RPA4Q13156 261 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 DSG2Q14126 1118 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 MESDQ14696 234 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 LRRC38Q5VT99 294 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 GDF7Q7Z4P5 450 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 ZC3H18Q86VM9 953 aaKnown RBP13.36□□□□□ -0.27
VPS29-201ENST00000360579 FJX1Q86VR8 437 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 ADGRF3Q8IZF5 1079 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 LILRA3Q8N6C8 439 aaPredicted RBP13.36□□□□□ -0.27
VPS29-201ENST00000360579 BCORP1Q8N888 145 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 DENND1AQ8TEH3 1009 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 CNDP1Q96KN2 507 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 COPS8Q99627 209 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 SLX1AQ9BQ83 275 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 ANP32EQ9BTT0 268 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 NDC1Q9BTX1 674 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 SPRTNQ9H040 489 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms