RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 FFAR2O15552 330 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 RGS20O76081 388 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 EPHX1P07099 455 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 NDUFS1P28331 727 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 ATG14Q6ZNE5 492 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 TMEM126BQ8IUX1 230 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 OXR1Q8N573 874 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 SLC35F5Q8WV83 523 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 SLC22A18Q96BI1 424 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 TMCO6Q96DC7 493 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 GPR22Q99680 433 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 SMOC2Q9H3U7 446 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 DPPA5A6NC42 116 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 C8BP07358 591 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 DDX6P26196 483 aaKnown RBP eCLIP11.55□□□□□ -0.56
COL9A1-202ENST00000357250 DAG1Q14118 895 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 MYBPC3Q14896 1274 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 ACSBG2Q5FVE4 666 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 LINGO4Q6UY18 593 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 MBOAT1Q6ZNC8 495 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 TMEM130Q8N3G9 435 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 CHCHD4Q8N4Q1 142 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 MEIOBQ8N635 442 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 NAT16Q8N8M0 369 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 SIDT2Q8NBJ9 832 aaKnown RBP11.55□□□□□ -0.56
COL9A1-202ENST00000357250 TSPEARQ8WU66 669 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 CLIP3Q96DZ5 547 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 NARS2Q96I59 477 aaKnown RBP11.55□□□□□ -0.56
COL9A1-202ENST00000357250 ZNF317Q96PQ6 595 aaPredicted RBP11.55□□□□□ -0.56
COL9A1-202ENST00000357250 RSPH9Q9H1X1 276 aaPredicted RBP11.55□□□□□ -0.56
COL9A1-202ENST00000357250 TRPV5Q9NQA5 729 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 SLC7A8Q9UHI5 535 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 ZNF222Q9UK12 451 aa11.55□□□□□ -0.56
COL9A1-202ENST00000357250 PDPK1O15530 556 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 NME6O75414 186 aaPredicted RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 IL1R2P27930 398 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 ITPKBP27987 946 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DGKGP49619 791 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 MLLT6P55198 1093 aaPredicted RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SLC25A11Q02978 314 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PRKCZQ05513 592 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DCAF12L1Q5VU92 463 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 TXNRD3NBQ6F5E7 133 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 GALNT5Q7Z7M9 940 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 NPLOC4Q8TAT6 608 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 POLR3BQ9NW08 1133 aaPredicted RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 RPL36Q9Y3U8 105 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 MAP4K5Q9Y4K4 846 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 N6AMT1Q9Y5N5 214 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 GPC6Q9Y625 555 aaPredicted RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 EPOP01588 193 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 VARSP26640 1264 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 GALNT2Q10471 571 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CRHR2Q13324 411 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CARD16Q5EG05 197 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 TMEM220Q6QAJ8 160 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 AHSA2Q719I0 299 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DNASE1L2Q92874 299 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 EXOSC8Q96B26 276 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CDKN2AIPNLQ96HQ2 116 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SLC35G5Q96KT7 338 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 BRINP2Q9C0B6 783 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 ABCG8Q9H221 673 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DSN1Q9H410 356 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 POPDC3Q9HBV1 291 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DUS2Q9NX74 493 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DHRS7Q9Y394 339 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 FANCGO15287 622 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 KRT33AO76009 404 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 GADD45GO95257 159 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 RPLP0P05388 317 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CREB1P16220 341 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CRISP3P54108 245 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 C10orf62Q5T681 223 aaPredicted RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 RNF220Q5VTB9 566 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 BRAT1Q6PJG6 821 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 OLFML1Q6UWY5 402 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SAPCD2Q86UD0 394 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PJA1Q8NG27 643 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 FAR1Q8WVX9 515 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PEX13Q92968 403 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 STOML2Q9UJZ1 356 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PCDHGB7Q9Y5F8 929 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SNX10Q9Y5X0 201 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 MYH14Q7Z406 1995 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SLC22A1O15245 554 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 NELFEP18615 380 aaKnown RBP11.54□□□□□ -0.56
COL9A1-202ENST00000357250 S100A1P23297 94 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PSMD8P48556 350 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 ERVK-21P61565 698 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DMPKQ09013 629 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SMCO1Q147U7 214 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 TOMM20Q15388 145 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 SPIN4Q56A73 249 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 PLEKHG4Q58EX7 1191 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DDI2Q5TDH0 399 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 FBXO42Q6P3S6 717 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CCDC80Q76M96 950 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 CYP2U1Q7Z449 544 aa11.54□□□□□ -0.56
COL9A1-202ENST00000357250 DIRAS2Q96HU8 199 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms