RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 EIF3FO00303 357 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 PRMT2P55345 433 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 HMGCS1Q01581 520 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 FAM98BQ52LJ0 330 aaKnown RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 CNKSR3Q6P9H4 555 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 TPRG1Q6ZUI0 275 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 GAREM2Q75VX8 874 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 ZNF548Q8NEK5 533 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 AUTS2Q8WXX7 1259 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 TIMMDC1Q9NPL8 285 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 DDX18Q9NVP1 670 aaKnown RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 ZDHHC3Q9NYG2 299 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 CFAP97Q9P2B7 532 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 STK16O75716 305 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 CKMP06732 381 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 CHRM1P11229 460 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 GABRR2P28476 465 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 CYP4F8P98187 520 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 MAPKAPK3Q16644 382 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 ERI1Q8IV48 349 aaKnown RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 RGL4Q8IZJ4 473 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 LIX1Q8N485 282 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 OR2T12Q8NG77 320 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 MRPS31Q92665 395 aaKnown RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 SCRN2Q96FV2 425 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 RC3H2Q9HBD1 1191 aaKnown RBP21.67■■□□□ 1.06
UPF3A-201ENST00000351487 SH3BP1Q9Y3L3 701 aa21.67■■□□□ 1.06
UPF3A-201ENST00000351487 A0A1B0GVG6 124 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 SNAP29O95721 258 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 ANXA5P08758 320 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 SNRPD1P62314 119 aaKnown RBP21.66■■□□□ 1.06
UPF3A-201ENST00000351487 CYP4F3Q08477 520 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 IMPG1Q17R60 797 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 DEFB115Q30KQ5 88 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 TBPL2Q6SJ96 375 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 EP400NLQ6ZTU2 488 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 OR52E4Q8NGH9 312 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 ULK4Q96C45 1275 aa21.66■■□□□ 1.06
UPF3A-201ENST00000351487 YTHDF1Q9BYJ9 559 aaKnown RBP21.66■■□□□ 1.06
UPF3A-201ENST00000351487 ZNF701M0R085 212 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-201ENST00000351487 CLIC3O95833 236 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 PGRP06401 933 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SRCP12931 536 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 GGT5P36269 586 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 ESRRGP62508 458 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SPANXN4Q5MJ08 99 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 LRRC66Q68CR7 880 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 MBOAT1Q6ZNC8 495 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 GPR141Q7Z602 305 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 TTC16Q8NEE8 873 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 LMLNQ96KR4 655 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 MCCC1Q96RQ3 725 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-201ENST00000351487 ZFP14Q9HCL3 533 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 C1orf109Q9NX04 203 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SPG21Q9NZD8 308 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 AP3M1Q9Y2T2 418 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 IGLV3-16A0A075B6K0 115 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 A8MX80 341 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 TEX28O15482 410 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 GMNNO75496 209 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 CLDN9O95484 217 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 EPORP19235 508 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 CHRNB3Q05901 458 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 ARHGEF7Q14155 803 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 PLA2G4EQ3MJ16 856 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 ZBED5Q49AG3 693 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 USP39Q53GS9 565 aaKnown RBP21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SUSD1Q6UWL2 747 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 USP45Q70EL2 814 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 MSRB3Q8IXL7 192 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 OFCC1Q8IZS5 231 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 VWCEQ96DN2 955 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 COPS8Q99627 209 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SH3GL1Q99961 368 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SLC32A1Q9H598 525 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 PCDHGA11Q9Y5H2 935 aa21.65■■□□□ 1.06
UPF3A-201ENST00000351487 HELZP42694 1942 aaKnown RBP21.65■■□□□ 1.06
UPF3A-201ENST00000351487 SEC22BO75396 215 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 SEC24DO94855 1032 aaPredicted RBP21.64■■□□□ 1.06
UPF3A-201ENST00000351487 KRT6AP02538 564 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 KRT6BP04259 564 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 LAG3P18627 525 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 NFKBIAP25963 317 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 KRT6CP48668 564 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 ALDH3A2P51648 485 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 ARSFP54793 590 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 B4GALNT1Q00973 533 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 TMC8Q8IU68 726 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 UGT2B28Q9BY64 529 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 SLC25A37Q9NYZ2 338 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 HS3ST2Q9Y278 367 aa21.64■■□□□ 1.06
UPF3A-201ENST00000351487 TRBV5-3A0A0A0MS03 114 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 ATN1P54259 1190 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-201ENST00000351487 PLIN5Q00G26 463 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 GBX1Q14549 363 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 GGTA1PQ4G0N0 100 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 TMEM214Q6NUQ4 689 aaKnown RBP21.64■■□□□ 1.05
UPF3A-201ENST00000351487 LRRC70Q7Z2Q7 622 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 DNAJB8Q8NHS0 232 aa21.64■■□□□ 1.05
UPF3A-201ENST00000351487 TMBIM1Q969X1 311 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms