RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 EOMESO95936 686 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 CHRM5P08912 532 aaPredicted RBP13.52□□□□□ -0.25
RTN4-202ENST00000337526 S100A1P23297 94 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 OMPP47874 163 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 BNIP3Q12983 259 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 CYP2U1Q7Z449 544 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 PLD6Q8N2A8 252 aaKnown RBP13.52□□□□□ -0.25
RTN4-202ENST00000337526 TMEM199Q8N511 208 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 CLEC4AQ9UMR7 237 aa13.52□□□□□ -0.25
RTN4-202ENST00000337526 NME6O75414 186 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 KHDRBS3O75525 346 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 NAPRTQ6XQN6 538 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 CDHR3Q6ZTQ4 885 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 USP30Q70CQ3 517 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 CHST9Q7L1S5 443 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 ADGRG2Q8IZP9 1017 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TAMM41Q96BW9 452 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 YTHDF1Q9BYJ9 559 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 TMEM165Q9HC07 324 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 GPC6Q9Y625 555 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 RPLP0P05388 317 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 FGF3P11487 239 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 PTX3P26022 381 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 RAB15P59190 212 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 SYT16Q17RD7 645 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TYSND1Q2T9J0 566 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 CES5AQ6NT32 575 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TMEM220Q6QAJ8 160 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 SNX20Q7Z614 316 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TMBIM1Q969X1 311 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 PLD4Q96BZ4 506 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 WRAP53Q9BUR4 548 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 GDAP2Q9NXN4 497 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 ZIM2Q9NZV7 527 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 MRPS33Q9Y291 106 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3DA0A087WVF3 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3IA0A087WXS9 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3EA0A087X179 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3KA0A087X1G2 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 A0A1W2PP18 115 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3FA6NER0 549 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 SLC38A8A6NNN8 435 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 EFCAB9A8MZ26 197 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3LB9A6J9 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 AREL1O15033 823 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 RSL1D1O76021 490 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 ECDO95905 644 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 FAM163BP0C2L3 166 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3HP0C7X1 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 CD36P16671 472 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 PRPS1L1P21108 318 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 FMO3P31513 532 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 PCDH1Q08174 1060 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 HSPB3Q12988 150 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 GPR33Q49SQ1 333 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3GQ6DHY5 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3CQ6IPX1 549 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 RTL4Q6ZR62 310 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TBC1D3Q8IZP1 549 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 PHC3Q8NDX5 983 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 FBXO22Q8NEZ5 403 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 FCGR1BQ92637 280 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 ZNF599Q96NL3 588 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 FCRL4Q96PJ5 515 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 PDCD10Q9BUL8 212 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.51□□□□□ -0.251e-7■■□□□ 12.1
RTN4-202ENST00000337526 E7ESA3 106 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 CDC7O00311 574 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 ANXA8P13928 327 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 ABATP80404 500 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 LAPTM5Q13571 262 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 LARS2Q15031 903 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 NOL9Q5SY16 702 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 RPS27LQ71UM5 84 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 SMG8Q8ND04 991 aaKnown RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 DBF4BQ8NFT6 615 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 XYLT2Q9H1B5 865 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 USP29Q9HBJ7 922 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 TUBA8Q9NY65 449 aaPredicted RBP13.51□□□□□ -0.25
RTN4-202ENST00000337526 PCDHGB3Q9Y5G1 929 aa13.51□□□□□ -0.25
RTN4-202ENST00000337526 SCN2BO60939 215 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 PRNPP04156 253 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 LAG3P18627 525 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 VARSP26640 1264 aaKnown RBP13.5□□□□□ -0.25
RTN4-202ENST00000337526 TPTEP56180 551 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 RPL26P61254 145 aaKnown RBP13.5□□□□□ -0.25
RTN4-202ENST00000337526 PRSS55Q6UWB4 352 aaPredicted RBP13.5□□□□□ -0.25
RTN4-202ENST00000337526 MEIOBQ8N635 442 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 ZNF248Q8NDW4 579 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 HEPHQ9BQS7 1158 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 FBRSL1Q9HCM7 1045 aaKnown RBP13.5□□□□□ -0.25
RTN4-202ENST00000337526 CLIC1O00299 241 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 SEPT4O43236 478 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 SLC25A12O75746 678 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 C8BP07358 591 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 DNAJB1P25685 340 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 PNLIPRP1P54315 467 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 NOGQ13253 232 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 NPTX1Q15818 432 aa13.5□□□□□ -0.25
RTN4-202ENST00000337526 ERMP1Q7Z2K6 904 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms