RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 SDK2Q58EX2 2172 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 AHCYP23526 432 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 NOS2P35228 1153 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 NUDT6P53370 316 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 RAB11FIP2Q7L804 512 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 VTCN1Q7Z7D3 282 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 TMEM86AQ8N2M4 240 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CNTD1Q8N815 330 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 PKP2Q99959 881 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 SLC39A8Q9C0K1 460 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 GOLGA2P5Q9HBQ8 144 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 PCDHGC5Q9Y5F6 944 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 hCG_1818297A0A087WSY0 165 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 NKRFO15226 690 aaKnown RBP eCLIP7.79□□□□□ -1.16
CIITA-201ENST00000324288 CES1P23141 567 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CHAF1BQ13112 559 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 TBRG1Q3YBR2 411 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CAND1Q86VP6 1230 aaKnown RBP7.79□□□□□ -1.16
CIITA-201ENST00000324288 AMIGO1Q86WK6 493 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 OR8D1Q8WZ84 308 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 COPS8Q99627 209 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 XKR8Q9H6D3 395 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 TIGARQ9NQ88 270 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 VWA7Q9Y334 891 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 H3BSA7 217 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 RNASEH2AO75792 299 aaKnown RBP7.79□□□□□ -1.16
CIITA-201ENST00000324288 CKMT2P17540 419 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CRHR1P34998 444 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CLEC12AQ5QGZ9 265 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 LYPLAL1Q5VWZ2 237 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 C17orf64Q86WR6 236 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CCDC54Q8NEL0 328 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 OR10Q1Q8NGQ4 319 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 GMIPQ9P107 970 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 NRCAMQ92823 1304 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CNTNAP4Q9C0A0 1308 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 TTC34A8MYJ7 566 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 STMND1H3BQB6 276 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 ASMTP46597 345 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 SLC6A9P48067 706 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 MAB21L1Q13394 359 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 PCBP2Q15366 365 aaKnown RBP eCLIP7.79□□□□□ -1.16
CIITA-201ENST00000324288 TIGD6Q17RP2 521 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 ABCA11PQ4W5N1 156 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 ZNF627Q7L945 461 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 ADAMTSL2Q86TH1 951 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 MFSD14AQ96MC6 490 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 PFDN5Q99471 154 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 GCNT1Q02742 428 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CXCL9Q07325 125 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 GXYLT1Q4G148 440 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 ZYG11AQ6WRX3 759 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 LRRC55Q6ZSA7 311 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 PIWIL4Q7Z3Z4 852 aaKnown RBP7.79□□□□□ -1.16
CIITA-201ENST00000324288 GPR180Q86V85 440 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 OR6K6Q8NGW6 343 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 WDR6Q9NNW5 1121 aaKnown RBP7.79□□□□□ -1.16
CIITA-201ENST00000324288 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.79□□□□□ -1.16
CIITA-201ENST00000324288 KCNE2Q9Y6J6 123 aa7.79□□□□□ -1.16
CIITA-201ENST00000324288 CCDC163A0A0D9SF12 145 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 SLC9A3R1O14745 358 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 C2P06681 752 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 XRCC1P18887 633 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 TUBA4AP68366 448 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 TUSC3Q13454 348 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 VGLL4Q14135 290 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 TMEM53Q6P2H8 277 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CEP76Q8TAP6 659 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ZNF451Q9Y4E5 1061 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CXCR6O00574 342 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 B4GALT5O43286 388 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 COL6A2P12110 1019 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 SNRPD2P62316 118 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ANKRD22Q5VYY1 191 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 RIOX2Q8IUF8 465 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 RIOX1Q9H6W3 641 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 HMX1Q9NP08 348 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 MEMO1Q9Y316 297 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 XPNPEP2O43895 674 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 OR4Q2P0C623 313 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 PDX1P52945 283 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CRTC1Q6UUV9 634 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ERI1Q8IV48 349 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 VCPIP1Q96JH7 1222 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 IFT80Q9P2H3 777 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 PTBP2Q9UKA9 531 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 BBIP1A8MTZ0 92 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GPR89AB7ZAQ6 455 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 EI24O14681 340 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 RPP14O95059 124 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ADH1CP00326 375 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GPR89BP0CG08 455 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 MLLT10P55197 1068 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ODF4Q2M2E3 257 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 OR14C36Q8NHC7 312 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 C1orf216Q8TAB5 229 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CPNE2Q96FN4 548 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 WACQ9BTA9 647 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 B3GNT5Q9BYG0 378 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ASB7Q9H672 318 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms