RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GLDCP23378 1020 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 VARSP26640 1264 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 TLR1Q15399 786 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 MYLK3Q32MK0 819 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF404Q494X3 552 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PRAMEF19Q5SWL8 479 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 OLFML2AQ68BL7 652 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 RDH12Q96NR8 316 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 BCO2Q9BYV7 579 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ADAM7Q9H2U9 754 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 A0A1W2PQ67 120 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 FAM25EA8MYX2 175 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 H3BM21 787 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 MSCO60682 206 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF132P52740 706 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 MADCAM1Q13477 382 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 TREML2Q5T2D2 321 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 GPR142Q7Z601 462 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 LMO3Q8TAP4 145 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PIGXQ8TBF5 258 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF641Q96N77 438 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 SPEF1Q9Y4P9 236 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PEAK1Q9H792 1746 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 A6NHS1 94 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 MANSC4A6NHS7 340 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 INMTO95050 263 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ELFN1P0C7U0 828 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PITPNAQ00169 270 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 C9orf131Q5VYM1 1079 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 RPTNQ6XPR3 784 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF517Q6ZMY9 492 aaPredicted RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 MIPEPQ99797 713 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 DUSP26Q9BV47 211 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PCDHGC4Q9Y5F7 938 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 N6AMT1Q9Y5N5 214 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ARL5AQ9Y689 179 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 OR10H2O60403 315 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ECI2O75521 394 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 CAPN15O75808 1086 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 OAS1P00973 400 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PROZP22891 400 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 RUNDC3AQ59EK9 446 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 SLC39A4Q6P5W5 647 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PAQR3Q6TCH7 311 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 RBM12BQ8IXT5 1001 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 TRNT1Q96Q11 434 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 GPR88Q9GZN0 384 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 TBC1D17Q9HA65 648 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 COMMD3Q9UBI1 195 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 OR10H1Q9Y4A9 318 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF487B1APH4 448 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 NDUFB5O43674 189 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 ACSL4O60488 711 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 DNAJB5O75953 348 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 CD247P20963 164 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 CD72P21854 359 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PAFAH1B3Q15102 231 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 LBX2Q6XYB7 198 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PRR23CQ6ZRP0 262 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 HDAC2Q92769 488 aaKnown RBP12.63□□□□□ -0.39
COL3A1-201ENST00000304636 POFUT2Q9Y2G5 429 aa12.63□□□□□ -0.39
COL3A1-201ENST00000304636 PTPRJQ12913 1337 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 SNED1Q8TER0 1413 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 H3BNH8 94 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 SLC2A2P11168 524 aaPredicted RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF24P17028 368 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 PRPS1L1P21108 318 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 SLC6A4P31645 630 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 PTGS2P35354 604 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 AP1S1P61966 158 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 MYBPC1Q00872 1141 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 SULT2A1Q06520 285 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CBX2Q14781 532 aaPredicted RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 RAB39AQ14964 217 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 LARS2Q15031 903 aaKnown RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF423Q2M1K9 1284 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 RBM20Q5T481 1227 aaKnown RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 C6orf183Q5T699 404 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 OGFRL1Q5TC84 451 aaPredicted RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 ADNP2Q6IQ32 1131 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 OR9I1Q8NGQ6 314 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 KLRG1Q96E93 195 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 KCTD7Q96MP8 289 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 ADAMTS10Q9H324 1103 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 IL1RAPQ9NPH3 570 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 EVLQ9UI08 416 aaPredicted RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 PCDHGA11Q9Y5H2 935 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CAMTA1Q9Y6Y1 1673 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF541Q9H0D2 1346 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 OR6C70A6NIJ9 312 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 C1QTNF3-AMACRE9PGA6 284 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CCNDBP1O95273 360 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 TOP3BO95985 862 aaKnown RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CORO1AP31146 461 aaKnown RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CLCNKBP51801 687 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 RAPSNQ13702 412 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 TARBP2Q15633 366 aaKnown RBP12.62□□□□□ -0.39
COL3A1-201ENST00000304636 MEP1AQ16819 746 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 SLC2A7Q6PXP3 512 aa12.62□□□□□ -0.39
COL3A1-201ENST00000304636 CAND1Q86VP6 1230 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms