RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 FOXM1Q08050 763 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 AMZ1Q400G9 498 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 ZFP69Q49AA0 526 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 R3HCC1LQ7Z5L2 792 aaKnown RBP13.21□□□□□ -0.29
HPS3-201ENST00000296051 CMTM8Q8IZV2 173 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 RBFAQ8N0V3 343 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 LEMD2Q8NC56 503 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 RBM4BQ9BQ04 359 aaKnown RBP13.21□□□□□ -0.29
HPS3-201ENST00000296051 RBM4Q9BWF3 364 aaKnown RBP13.21□□□□□ -0.29
HPS3-201ENST00000296051 CCSER2Q9H7U1 834 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 STMN3Q9NZ72 180 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 WBP11Q9Y2W2 641 aaKnown RBP13.21□□□□□ -0.29
HPS3-201ENST00000296051 ARL5AQ9Y689 179 aa13.21□□□□□ -0.29
HPS3-201ENST00000296051 MYO5AQ9Y4I1 1855 aaKnown RBP13.21□□□□□ -0.29
HPS3-201ENST00000296051 SH3PXD2BA1X283 911 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 H3BM21 787 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 MYL12BO14950 172 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 RGS20O76081 388 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 PRKD3O94806 890 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 PENKP01210 267 aaPredicted RBP13.21□□□□□ -0.3
HPS3-201ENST00000296051 FOSL2P15408 326 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 RAB14P61106 215 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 HERC3Q15034 1050 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 RFX4Q33E94 735 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 LUZP2Q86TE4 346 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 STYXQ8WUJ0 223 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 IRF7Q92985 503 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 RNFT2Q96EX2 444 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 SORT1Q99523 831 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 RGS17Q9UGC6 210 aaPredicted RBP13.21□□□□□ -0.3
HPS3-201ENST00000296051 ATP6V1HQ9UI12 483 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 B4GAT1O43505 415 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 FAM189A1O60320 539 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 OTCP00480 354 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 CDH4P55283 916 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 VBP1P61758 197 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 ZNF280BQ86YH2 543 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 CEP97Q8IW35 865 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 SUSD3Q96L08 255 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 SMG9Q9H0W8 520 aaKnown RBP13.21□□□□□ -0.3
HPS3-201ENST00000296051 FBXW11Q9UKB1 542 aa13.21□□□□□ -0.3
HPS3-201ENST00000296051 ZNF490Q9ULM2 529 aaPredicted RBP13.21□□□□□ -0.3
HPS3-201ENST00000296051 SCN11AQ9UI33 1791 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 TOPAZ1Q8N9V7 1692 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 CPED1A4D0V7 1026 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 MYADML2A6NDP7 307 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 PKMP14618 531 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 ARSAP15289 507 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 MINDY4Q4G0A6 757 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 PIGGQ5H8A4 983 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 CDH24Q86UP0 819 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 UXS1Q8NBZ7 420 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 KBTBD8Q8NFY9 601 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 USP7Q93009 1102 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 SLC9A7Q96T83 725 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 KCNS3Q9BQ31 491 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 PPIEQ9UNP9 301 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 JUNP05412 331 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 HLA-DQB2P05538 268 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 IQCF3P0C7M6 154 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 WARSP23381 471 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 CTSKP43235 329 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 IST1P53990 364 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 ATP6V0D1P61421 351 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 TEAD2Q15562 447 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 ZSWIM7Q19AV6 140 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 XKR6Q5GH73 641 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 DEFB119Q8N690 84 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 C2orf15Q8WU43 125 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 SLC22A17Q8WUG5 538 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 IRGQQ8WZA9 623 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 BIRC7Q96CA5 298 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 NSUN5Q96P11 429 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 QRFPRQ96P65 431 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 CD320Q9NPF0 282 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 GLYATL1P3A0A0U1RQE8 302 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 PRMT5O14744 637 aaPredicted RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 CLPXO76031 633 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 PABPC1P11940 636 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 CD36P16671 472 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 IMPDH1P20839 514 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 CDH5P33151 784 aaPredicted RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 RFC2P35250 354 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 CCT3P49368 545 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 NKX2-5P52952 324 aaPredicted RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 NUDT6P53370 316 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 INTS11Q5TA45 600 aaKnown RBP13.2□□□□□ -0.3
HPS3-201ENST00000296051 SLC39A5Q6ZMH5 540 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 SLC38A3Q99624 504 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 ZNF696Q9H7X3 374 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 STYXL1Q9Y6J8 313 aa13.2□□□□□ -0.3
HPS3-201ENST00000296051 ASXL3Q9C0F0 2248 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 MATN3O15232 486 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 SERPINA1P01009 418 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 TSPAN19P0C672 248 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 UMPSP11172 480 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 PCSK6P29122 969 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 PMS2P3Q13401 168 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 GRB7Q14451 532 aa13.19□□□□□ -0.3
HPS3-201ENST00000296051 NPTX1Q15818 432 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms