RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 SLC38A9Q8NBW4 561 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS41-201ENST00000265745 PHC3Q8NDX5 983 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 TFGQ92734 400 aaPredicted RBP9.45□□□□□ -0.9
VPS41-201ENST00000265745 ZNF501Q96CX3 271 aaPredicted RBP9.45□□□□□ -0.9
VPS41-201ENST00000265745 FERD3LQ96RJ6 166 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 NRTNQ99748 197 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 TFB2MQ9H5Q4 396 aaKnown RBP9.45□□□□□ -0.9
VPS41-201ENST00000265745 MVB12BQ9H7P6 319 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 C1GALT1Q9NS00 363 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 POMT2Q9UKY4 750 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 CAPN6Q9Y6Q1 641 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 TENM4Q6N022 2769 aa9.45□□□□□ -0.9
VPS41-201ENST00000265745 ERI2A8K979 691 aaKnown RBP9.44□□□□□ -0.9
VPS41-201ENST00000265745 MATN2O00339 956 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 LIASO43766 372 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 CPNE3O75131 537 aaKnown RBP9.44□□□□□ -0.9
VPS41-201ENST00000265745 SCRG1O75711 98 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 SUN1O94901 812 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ZNF16P17020 682 aaPredicted RBP9.44□□□□□ -0.9
VPS41-201ENST00000265745 PTPN4P29074 926 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 CDC25BP30305 580 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 CASRP41180 1078 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 PREPP48147 710 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 TLE1Q04724 770 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 PRKG2Q13237 762 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 LAMB3Q13751 1172 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 OASLQ15646 514 aaKnown RBP9.44□□□□□ -0.9
VPS41-201ENST00000265745 CCDC38Q502W7 563 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 PLEKHS1Q5SXH7 462 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 PRAMEF17Q5VTA0 474 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ZNF449Q6P9G9 518 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 CAPN12Q6ZSI9 719 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 SPC24Q8NBT2 197 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 OR52E1Q8NGJ3 308 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 OR52K1Q8NGK4 314 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 UBE2Q2Q8WVN8 375 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ATG4AQ8WYN0 398 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ALS2CR12Q96Q35 445 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 RUFY1Q96T51 708 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 TLR10Q9BXR5 811 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 FRMD8P1Q9BZ68 369 aaPredicted RBP9.44□□□□□ -0.9
VPS41-201ENST00000265745 PITPNM3Q9BZ71 974 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 TWSG1Q9GZX9 223 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ACTL8Q9H568 366 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ETNK1Q9HBU6 452 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 LATS2Q9NRM7 1088 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 SMARCAL1Q9NZC9 954 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 ANAPC2Q9UJX6 822 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 POLHQ9Y253 713 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 PRSS21Q9Y6M0 314 aa9.44□□□□□ -0.9
VPS41-201ENST00000265745 CCDC78A2IDD5 438 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 CCDC162PA2VCL2 907 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 GSAPA4D1B5 854 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 CDC14CA4D256 554 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 OR51F1A6NGY5 319 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 K7EM74 188 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 MEN1O00255 615 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 BTN3A1O00481 513 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 LIN7AO14910 233 aaPredicted RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 IFNB1P01574 187 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 MSL3P1P0C860 447 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 CDH3P22223 829 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 MSNP26038 577 aaKnown RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 ACADLP28330 430 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 FOXN2P32314 431 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 GRIA1P42261 906 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 NSG1P42857 185 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 CDH17Q12864 832 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 GPS2Q13227 327 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 BOP1Q14137 746 aaKnown RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 ITIH4Q14624 930 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 LACTB2Q53H82 288 aaPredicted RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 ZNF789Q5FWF6 425 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 IZUMO3Q5VZ72 239 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 TCTN3Q6NUS6 607 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 PACS1Q6VY07 963 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 AMIGO1Q86WK6 493 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 SLC13A5Q86YT5 568 aaPredicted RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 TMEM126BQ8IUX1 230 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 ADGRF3Q8IZF5 1079 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 DNAAF3Q8N9W5 541 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 OR13J1Q8NGT2 312 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 C1orf54Q8WWF1 131 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 SEC14L1Q92503 715 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 MR1Q95460 341 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 HDAC10Q969S8 669 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 LRFN5Q96NI6 719 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 TRAPPC9Q96Q05 1148 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 EPN3Q9H201 632 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 XKR8Q9H6D3 395 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 SYTL2Q9HCH5 934 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 ZNF358Q9NW07 568 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 SOHLH2Q9NX45 425 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 TLK1Q9UKI8 766 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 RIMKLBQ9ULI2 386 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 GUCA1BQ9UMX6 200 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 FARSAQ9Y285 508 aaKnown RBP9.43□□□□□ -0.9
VPS41-201ENST00000265745 BSNQ9UPA5 3926 aa9.43□□□□□ -0.9
VPS41-201ENST00000265745 MYO18BQ8IUG5 2567 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms