RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PCDHB5Q9Y5E4 795 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 RAI2Q9Y5P3 530 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 ST14Q9Y5Y6 855 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 SLC30A1Q9Y6M5 507 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 OR7A17O14581 309 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 INSIG1O15503 277 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 HOXA2O43364 376 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 MITFO75030 526 aaPredicted RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 GMNNO75496 209 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 GJB5O95377 273 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 HTR1AP08908 422 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 ALPIP09923 528 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 UMPSP11172 480 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 KCNAB2Q13303 367 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 CLLU1OSQ5K130 101 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 EGFLAMQ63HQ2 1017 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 C8orf59Q8N0T1 100 aaPredicted RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 SPARTQ8N0X7 666 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 NKAPQ8N5F7 415 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 PDPRQ8NCN5 879 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 PAPD5Q8NDF8 572 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 FAM162AQ96A26 154 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 EGFL8Q99944 293 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 MYOCQ99972 504 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 HACD3Q9P035 362 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 TMA7Q9Y2S6 64 aaKnown RBP9.87□□□□□ -0.83
LIG3-201ENST00000262327 PCDHB7Q9Y5E2 793 aa9.87□□□□□ -0.83
LIG3-201ENST00000262327 FUOMA2VDF0 154 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 KRT87PA6NCN2 255 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 DRGXA6NNA5 263 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 UPK3BL1B0FP48 263 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 UPK3BL2E5RIL1 263 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 H0Y626 953 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 DIRAS1O95057 198 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TRIM16O95361 564 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 INHBBP09529 407 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 RAP2AP10114 183 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 S100A1P23297 94 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CRHBPP24387 322 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CD47Q08722 323 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 COQ5Q5HYK3 327 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 FAAH2Q6GMR7 532 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 PROSER1Q86XN7 944 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ZNF420Q8TAQ5 688 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 DOK1Q99704 481 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 RHNO1Q9BSD3 238 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 FUNDC2Q9BWH2 189 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GPR62Q9BZJ7 368 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 PRDM8Q9NQV8 689 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 FAM118AQ9NWS6 357 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ZIM2Q9NZV7 527 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 KLQ9UEF7 1012 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 NOX1Q9Y5S8 564 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 NLRC5Q86WI3 1866 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TDRD15B5MCY1 1934 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 ZBBXA8MT70 800 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CBFA2T3O75081 653 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 PFKLP17858 780 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TYMPP19971 482 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 LPOP22079 712 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 OPRL1P41146 370 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 RAD23AP54725 363 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 DSC1Q08554 894 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GTF2H2Q13888 395 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 SPIDRQ14159 915 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 DPY19L1Q2PZI1 675 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ATXN7L2Q5T6C5 722 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 GTF2H2CQ6P1K8 395 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 FAM151BQ6UXP7 276 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 RNF19BQ6ZMZ0 732 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 LKAAEAR1Q8TD35 194 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 BARD1Q99728 777 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 TMEM106CQ9BVX2 250 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ACTR8Q9H981 624 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 POPDC3Q9HBV1 291 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TLR8Q9NR97 1041 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 COMMD8Q9NX08 183 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 SEPT3Q9UH03 358 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 ZNF639Q9UID6 485 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 MAGEL2Q9UJ55 1249 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 FBXO10Q9UK96 956 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 AGO1Q9UL18 857 aaKnown RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 VPS4AQ9UN37 437 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 NEUROG3Q9Y4Z2 214 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 PCDHB9Q9Y5E1 797 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GPC6Q9Y625 555 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 PTPRDP23468 1912 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GREB1Q4ZG55 1949 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 A0A1W2PQ67 120 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CFAP99D6REC4 459 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 TMEM189-UBE2V1I3L0A0 370 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 STX16O14662 325 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 CLTBP09497 229 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 NAT2P11245 290 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GGT1P19440 569 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 HTR1BP28222 390 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 GKP32189 559 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 DGCR6Q14129 220 aa9.86□□□□□ -0.83
LIG3-201ENST00000262327 SIM2Q14190 667 aaPredicted RBP9.86□□□□□ -0.83
LIG3-201ENST00000262327 TAF1AQ15573 450 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms