RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ALDH7A1P49419 539 aaKnown RBP20.89■□□□□ 0.94
TRIM28-201ENST00000253024 CYP4F8P98187 520 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 FPGSQ05932 587 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 SULT1C3Q6IMI6 304 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 NCEH1Q6PIU2 408 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 CCDC81Q6ZN84 652 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 RBM23Q86U06 439 aaKnown RBP20.89■□□□□ 0.94
TRIM28-201ENST00000253024 OSBPL6Q9BZF3 934 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 LHPPQ9H008 270 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 DHRS7Q9Y394 339 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 A0A1W2PQ45 241 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-201ENST00000253024 A0A1W2PQY0 241 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 ILVBLA1L0T0 632 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 DEAF1O75398 565 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-201ENST00000253024 PFKLP17858 780 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 HNF1BP35680 557 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 CDKN2CP42773 168 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 CTSOP43234 321 aaPredicted RBP20.89■□□□□ 0.93
TRIM28-201ENST00000253024 EEFSECP57772 596 aaKnown RBP20.89■□□□□ 0.93
TRIM28-201ENST00000253024 CYP4F3Q08477 520 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 DGCR6Q14129 220 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 GPNMBQ14956 572 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 ZSWIM9Q86XI8 627 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 SLC47A1Q96FL8 570 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 NUSAP1Q9BXS6 441 aaKnown RBP20.89■□□□□ 0.93
TRIM28-201ENST00000253024 ZIM2Q9NZV7 527 aa20.89■□□□□ 0.93
TRIM28-201ENST00000253024 SERPINA1P01009 418 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 ESR1P03372 595 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 PGRP06401 933 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 HOXB8P17481 243 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 TUBA4AP68366 448 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 NETO1Q8TDF5 533 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 ARL15Q9NXU5 204 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 hCG_2039718K7EN88 272 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 ZDHHC11BP0C7U3 371 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 FCGR1AP12314 374 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 HMGA1P17096 107 aaKnown RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 AQP1P29972 269 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 SH3BGRP55822 239 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 KCNAB2Q13303 367 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 SLC14A1Q13336 389 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 DAG1Q14118 895 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 CRY1Q16526 586 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 MSRB3Q8IXL7 192 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 BEND7Q8N7W2 519 aaPredicted RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 GTF2H4Q92759 462 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 ZBTB18Q99592 522 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 AMBRA1Q9C0C7 1298 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 DNAAF2Q9NVR5 837 aaKnown RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 COMMD8Q9NX08 183 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 PCDHB3Q9Y5E6 796 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 OTCP00480 354 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 FTH1P02794 183 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 CDH1P12830 882 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 HTR1EP28566 365 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 PHC1P78364 1004 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 CACNG1Q06432 222 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 C16orf87Q6PH81 154 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.88■□□□□ 0.931e-9■□□□□ 9.6
TRIM28-201ENST00000253024 PTRH1Q86Y79 214 aaKnown RBP20.88■□□□□ 0.93
TRIM28-201ENST00000253024 SLC22A17Q8WUG5 538 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 SNX19Q92543 992 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.88■□□□□ 0.932e-6■■■□□ 16.3
TRIM28-201ENST00000253024 NEUROG3Q9Y4Z2 214 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 CORINQ9Y5Q5 1042 aa20.88■□□□□ 0.93
TRIM28-201ENST00000253024 CA12O43570 354 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 ZNF7P17097 686 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-201ENST00000253024 BPIP17213 487 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 IRF5Q13568 498 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 CTU2Q2VPK5 515 aaKnown RBP20.87■□□□□ 0.93
TRIM28-201ENST00000253024 ST13P5Q8NFI4 369 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-201ENST00000253024 DPH2Q9BQC3 489 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-201ENST00000253024 FAM126AQ9BYI3 521 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-201ENST00000253024 GPRC5BQ9NZH0 403 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 PCDHB14Q9Y5E9 798 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 CHD5Q8TDI0 1954 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 AREL1O15033 823 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 ANKRD28O15084 1053 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 MLLT10P55197 1068 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 NFATC2Q13469 925 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 PWP1Q13610 501 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 GALNT18Q6P9A2 607 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 BTLAQ7Z6A9 289 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 ADAMTSL2Q86TH1 951 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 CD99L2Q8TCZ2 262 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 TANKQ92844 425 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 ASIC4Q96FT7 647 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 APOLD1Q96LR9 279 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 VN1R3Q9BXE9 311 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 P2RY12Q9H244 342 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 PARVBQ9HBI1 364 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 LRTM1Q9HBL6 345 aa20.87■□□□□ 0.93
TRIM28-201ENST00000253024 TMEM189-UBE2V1I3L0A0 370 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 CXCR6O00574 342 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 KLK8O60259 260 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 NOL3O60936 208 aaKnown RBP20.86■□□□□ 0.93
TRIM28-201ENST00000253024 ALPLP05186 524 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 FMO3P31513 532 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 AKT1P31749 480 aa20.86■□□□□ 0.93
TRIM28-201ENST00000253024 ADARB1P78563 741 aaKnown RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms