RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ZSCAN26Q16670 478 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LRIT3Q3SXY7 679 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RPTNQ6XPR3 784 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 AP1S3Q96PC3 154 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SLC25A23Q9BV35 468 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LGR4Q9BXB1 951 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RETREG1Q9H6L5 497 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SLC24A3Q9HC58 644 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 COMMD9Q9P000 198 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MARK1Q9P0L2 795 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PSMC3IPQ9P2W1 217 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SH3GLB1Q9Y371 365 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TRPM6Q9BX84 2022 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SPTAN1Q13813 2472 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MYH4Q9Y623 1939 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 E2F3O00716 465 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 COCHO43405 550 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SOCS5O75159 536 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 COQ9O75208 318 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 C8GP07360 202 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ENDOUP21128 410 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TNFSF4P23510 183 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HSD3B2P26439 372 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TPP2P29144 1249 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PLIN5Q00G26 463 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TGFBR3Q03167 851 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TRAP1Q12931 704 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TRIP6Q15654 476 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 BTBD16Q32M84 506 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FAM78AQ5JUQ0 283 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PRAMEF14Q5SWL7 426 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CILP2Q8IUL8 1156 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LRRC8AQ8IWT6 810 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MEIOBQ8N635 442 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FNDC5Q8NAU1 212 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZSWIM2Q8NEG5 633 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MYRIPQ8NFW9 859 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SLC9A6Q92581 669 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MTFMTQ96DP5 389 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PRMT1Q99873 361 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HCFC1R1Q9NWW0 138 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 OSER1Q9NX31 292 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RCOR3Q9P2K3 495 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 KLHL20Q9Y2M5 609 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 DCDC2BA2VCK2 349 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 GJE1A6NN92 205 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 AQP9O43315 295 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 DPM1O60762 260 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ADAMTS4O75173 837 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SERPINB7O75635 380 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RPL10P27635 214 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CLK1P49759 484 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MAPK12P53778 367 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FOXK2Q01167 660 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 C19orf57Q0VDD7 668 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 BEND6Q5SZJ8 279 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 EXOC3L1Q86VI1 746 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PACS2Q86VP3 889 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 NACC2Q96BF6 587 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TMEM27Q9HBJ8 222 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CLEC1BQ9P126 229 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MCM8Q9UJA3 840 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TBX21Q9UL17 535 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PCDHGA6Q9Y5G7 932 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MUC6Q6W4X9 2439 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 PLIN4Q96Q06 1357 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 SOBPA7XYQ1 873 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 TRIM24O15164 1050 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 MGRN1O60291 552 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GNAZP19086 355 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GRIA4P48058 902 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 EPHA4P54764 986 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 PCBP4P57723 403 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GABREP78334 506 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 EIF3IQ13347 325 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GRTP1Q5TC63 336 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 TCEAL6Q6IPX3 200 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 CDC73Q6P1J9 531 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 STK32AQ8WU08 396 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 FATE1Q969F0 183 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 FAM120BQ96EK7 910 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF607Q96SK3 696 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 CHCHD6Q9BRQ6 235 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 RIOK2Q9BVS4 552 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 R3HDMLQ9H3Y0 253 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 MVB12BQ9H7P6 319 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 RBM12Q9NTZ6 932 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 CXXC1Q9P0U4 656 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 TRPS1Q9UHF7 1281 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 SLC9A8Q9Y2E8 581 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 DNAJC25-GNG10A0A024R161 153 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 SLCO1B7G3V0H7 640 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GYG2O15488 501 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 ULK1O75385 1050 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 AGTP01019 485 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 UGT1A5P35504 534 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 EMP2P54851 167 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 YPEL5P62699 121 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 MEF2AQ02078 507 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms