RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ACADLP28330 430 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 CXCR5P32302 372 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 DLSTP36957 453 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 KCNJ1P48048 391 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 CD151P48509 253 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 LMAN1P49257 510 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 POLE2P56282 527 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 CRADDP78560 199 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 NFKB2Q00653 900 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 ABRQ12979 859 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 SKIDA1Q1XH10 827 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 BORAQ6PGQ7 559 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 C6orf15Q6UXA7 325 aaPredicted RBP12.68□□□□□ -0.38
LIG1-212ENST00000596549 PHC3Q8NDX5 983 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 TRIM58Q8NG06 486 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 OR4E2Q8NGC2 313 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 OR5AR1Q8NGP9 310 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 ELMO1Q92556 727 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 ZNF501Q96CX3 271 aaPredicted RBP12.68□□□□□ -0.38
LIG1-212ENST00000596549 FERD3LQ96RJ6 166 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 AKIRIN1Q9H9L7 192 aaPredicted RBP12.68□□□□□ -0.38
LIG1-212ENST00000596549 RARRES3Q9UL19 164 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 ICKQ9UPZ9 632 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 PPP2R2CQ9Y2T4 447 aa12.68□□□□□ -0.38
LIG1-212ENST00000596549 SPENQ96T58 3664 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 GSAPA4D1B5 854 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 BHMG1C9JSJ3 638 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 PYCARD-AS1I3L0S3 204 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 QSOX1O00391 747 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 LIN7AO14910 233 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 ZBTB11O95625 1053 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 FTH1P02794 183 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 GSTM1P09488 218 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 FURINP09958 794 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 TPBGLP0DKB5 382 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 ST6GAL1P15907 406 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 HSD11B2P80365 405 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 BASP1P80723 227 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 GSTM4Q03013 218 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 ACY1Q03154 408 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 KRT33BQ14525 404 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 BRD3Q15059 726 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 ZNF789Q5FWF6 425 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 CYB5D1Q6P9G0 228 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 LDB1Q86U70 411 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 ADGRF3Q8IZF5 1079 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 CARFQ8N187 725 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 PRELID2Q8N945 189 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 CT55Q8WUE5 264 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 LCN9Q8WX39 176 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 TFGQ92734 400 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 PEX13Q92968 403 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 SGSM3Q96HU1 749 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 EFHD1Q9BUP0 239 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 PITPNM3Q9BZ71 974 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 TWSG1Q9GZX9 223 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 SRMSQ9H3Y6 488 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 TFB2MQ9H5Q4 396 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 XKR8Q9H6D3 395 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 MVB12BQ9H7P6 319 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 PDE7BQ9NP56 450 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 LHX9Q9NQ69 397 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 TREX1Q9NSU2 369 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 GEMIN8Q9NWZ8 242 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 SOHLH2Q9NX45 425 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 MARCH4Q9P2E8 410 aaPredicted RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 CDYLQ9Y232 598 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 ZKSCAN5Q9Y2L8 839 aa12.67□□□□□ -0.38
LIG1-212ENST00000596549 FLNBO75369 2602 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 TNRC6AQ8NDV7 1962 aaKnown RBP12.67□□□□□ -0.38
LIG1-212ENST00000596549 TENM4Q6N022 2769 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TCRBV7S3A2A0A539 114 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 SLC9B1P1A6NJY1 282 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 MATN2O00339 956 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 CEP104O60308 925 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 GAS8O95995 478 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 NTRK1P04629 796 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PVRP15151 417 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 CDH3P22223 829 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 ARNTP27540 789 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PRDX3P30048 256 aaKnown RBP12.66□□□□□ -0.38
LIG1-212ENST00000596549 SESN2P58004 480 aaPredicted RBP12.66□□□□□ -0.38
LIG1-212ENST00000596549 TUBB4BP68371 445 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PRAMEP78395 509 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PRKAA1Q13131 559 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 GPS2Q13227 327 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PRKG2Q13237 762 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 DNASE1L3Q13609 305 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 LAMB3Q13751 1172 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TUBB2AQ13885 445 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 CRTC2Q53ET0 693 aaPredicted RBP12.66□□□□□ -0.38
LIG1-212ENST00000596549 PRAMEF17Q5VTA0 474 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 ARMC6Q6NXE6 501 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 C16orf46Q6P387 395 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TTC27Q6P3X3 843 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 TMEM135Q86UB9 458 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 AMIGO1Q86WK6 493 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 VRK3Q8IV63 474 aa12.66□□□□□ -0.38
LIG1-212ENST00000596549 PPHLN1Q8NEY8 458 aaKnown RBP12.66□□□□□ -0.38
LIG1-212ENST00000596549 OR4L1Q8NH43 312 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms