RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FAM159BA6NKW6 160 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 MYO1GB0I1T2 1018 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 PSMD11O00231 422 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CLDN4O14493 209 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 FCHO1O14526 889 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 HOXC11O43248 304 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 AHSGP02765 367 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 SRFP11831 508 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CSNK1DP48730 415 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 PRKAG1P54619 331 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CLCQ05315 142 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 TBL3Q12788 808 aaKnown RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 ZC3HC1Q86WB0 502 aaKnown RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 UNC5BQ8IZJ1 945 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 FSTL5Q8N475 847 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 CNTD1Q8N815 330 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 RANBP9Q96S59 729 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 FZD3Q9NPG1 666 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 STX18Q9P2W9 335 aaKnown RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 STOML1Q9UBI4 398 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 ZNF490Q9ULM2 529 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 COLQQ9Y215 455 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 DLEC1Q9Y238 1755 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 C15orf38-AP3S2A0A0A6YYH1 394 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 WASH3PC4AMC7 463 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 ANKRD65E5RJM6 399 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 PRAMEF26H0Y7S4 382 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 PLIN3O60664 434 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 CDH2P19022 906 aaPredicted RBP9.66□□□□□ -0.86
LIG3-216ENST00000593099 CSTF2P33240 577 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIG3-216ENST00000593099 HNMTP50135 292 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 AKR1D1P51857 326 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 C1orf61Q13536 156 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 EML3Q32P44 896 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 TTMPQ5BVD1 217 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 FAAH2Q6GMR7 532 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 TRNP1Q6NT89 227 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 LILRA6Q6PI73 481 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 HDDC2Q7Z4H3 204 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 ARPINQ7Z6K5 226 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 KCNJ9Q92806 393 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 ACTL7AQ9Y615 435 aa9.66□□□□□ -0.86
LIG3-216ENST00000593099 MRASO14807 208 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 SASH3O75995 380 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 PDHA1P08559 390 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 ZDHHC11BP0C7U3 371 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 IL12RB1P42701 662 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 STX4Q12846 297 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 ZCCHC8Q6NZY4 707 aaKnown RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 CRTC1Q6UUV9 634 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 BNC2Q6ZN30 1099 aaPredicted RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 LONP2Q86WA8 852 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 FAM129CQ86XR2 697 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 NT5C3BQ969T7 300 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CENPTQ96BT3 561 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 ROGDIQ9GZN7 287 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 LGALS13Q9UHV8 139 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 EIF2B4Q9UI10 523 aaKnown RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 CDC14AQ9UNH5 594 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 DOCK3Q8IZD9 2030 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 K7EPI3 171 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 DCXO43602 365 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 EPN2O95208 641 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 LINC00032P0C843 101 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CD6P30203 668 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 BUD31P41223 144 aaPredicted RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 SIM2Q14190 667 aaPredicted RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 MINDY4Q4G0A6 757 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 PRAMEF14Q5SWL7 426 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 PLEKHS1Q5SXH7 462 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CCNYL2Q5T2Q4 361 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 PRAMEF13Q5VWM6 474 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 C10orf53Q8N6V4 93 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 KYQ8NBH2 561 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 NCSTNQ92542 709 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 APOLD1Q96LR9 279 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 ZSWIM3Q96MP5 696 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 PLEKHG4BQ96PX9 1271 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 EFCAB11Q9BUY7 163 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 MECRQ9BV79 373 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 TBC1D23Q9NUY8 699 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 TEKT2Q9UIF3 430 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CROTQ9UKG9 612 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 HS3ST2Q9Y278 367 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 OR10H1Q9Y4A9 318 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 COPG1Q9Y678 874 aaKnown RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 ZSCAN9O15535 394 aaPredicted RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 PRMT9Q6P2P2 845 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 TSPAN33Q86UF1 283 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CAND1Q86VP6 1230 aaKnown RBP9.65□□□□□ -0.86
LIG3-216ENST00000593099 TMEM145Q8NBT3 493 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 TTLQ8NG68 377 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 RLN3Q8WXF3 142 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 TMEM216Q9P0N5 145 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 GPR34Q9UPC5 381 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 ATAD5Q96QE3 1844 aa9.65□□□□□ -0.86
LIG3-216ENST00000593099 CITO14578 2027 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 ATP6AP2A0A1C7CYW4 349 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 TK2O00142 265 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 ATP6AP2O75787 350 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms