RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NRP2O60462 931 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 RNASEH1O60930 286 aaKnown RBP13.89□□□□□ -0.19
LIG3-205ENST00000585941 MTX2O75431 263 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 C6P13671 934 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 TNFRSF4P43489 277 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 ENPP2Q13822 863 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 RCN1Q15293 331 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 C18orf21Q32NC0 220 aaPredicted RBP13.89□□□□□ -0.19
LIG3-205ENST00000585941 BCL7AQ4VC05 210 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 MYLK4Q86YV6 388 aaPredicted RBP13.89□□□□□ -0.19
LIG3-205ENST00000585941 MMAAQ8IVH4 418 aaKnown RBP13.89□□□□□ -0.19
LIG3-205ENST00000585941 RASGEF1AQ8N9B8 481 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 CXorf40AQ8TE69 158 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 BRINP2Q9C0B6 783 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 AIG1Q9NVV5 245 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 CACNA2D2Q9NY47 1150 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 NKX1-2Q9UD57 310 aaPredicted RBP13.89□□□□□ -0.19
LIG3-205ENST00000585941 ANGPTL2Q9UKU9 493 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 POMPQ9Y244 141 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 PTGDR2Q9Y5Y4 395 aa13.89□□□□□ -0.19
LIG3-205ENST00000585941 OR2AG2A6NM03 316 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 SLC28A1O00337 649 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 AP1G1O43747 822 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 ANP32DO95626 131 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PCSK2P16519 638 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 GNAZP19086 355 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 MAP4P27816 1152 aaKnown RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 GPR1P46091 355 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PSMD8P48556 350 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PLOD1Q02809 727 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 SLC34A1Q06495 639 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 LRP8Q14114 963 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PDCD4Q53EL6 469 aaKnown RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 REP15Q6BDI9 236 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 IL27RAQ6UWB1 636 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.88□□□□□ -0.19
LIG3-205ENST00000585941 ATL1Q8WXF7 558 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 FBXL8Q96CD0 374 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PPP3R2Q96LZ3 170 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CDRT15Q96T59 188 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CLEC1BQ9P126 229 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 MBD1Q9UIS9 605 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 GPR45Q9Y5Y3 372 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 STON1Q9Y6Q2 735 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CKAP5Q14008 2032 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 DYTNA2CJ06 578 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 H0Y3Z8 333 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 MRASO14807 208 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 LIN7AO14910 233 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 RGS14O43566 566 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 TSPAN6O43657 245 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 VEGFDO43915 354 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PSIP1O75475 530 aaKnown RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 KRT36O76013 467 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PDE5AO76074 875 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CLDN9O95484 217 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 ADH1BP00325 375 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CATP04040 527 aaKnown RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 P2RY2P41231 377 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 METAP1P53582 386 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 MAD2L1Q13257 205 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 CAMK2GQ13555 558 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 GTF2H3Q13889 308 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 GGTA1PQ4G0N0 100 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PIGGQ5H8A4 983 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 C6orf136Q5SQH8 315 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 WLSQ5T9L3 541 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 EGFLAMQ63HQ2 1017 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 RAET1GQ6H3X3 334 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PRMT9Q6P2P2 845 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PAOXQ6QHF9 649 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 PARM1Q6UWI2 310 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 HPS6Q86YV9 775 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 VRK3Q8IV63 474 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 SFTPA1Q8IWL2 248 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 FGF14Q92915 247 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 FOPNLQ96NB1 174 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CDK15Q96Q40 435 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 ACOX2Q99424 681 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 NPAS2Q99743 824 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 RSPH9Q9H1X1 276 aaPredicted RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 TRIM39Q9HCM9 518 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 HEBP1Q9NRV9 189 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 ZIM2Q9NZV7 527 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 CNOT6Q9ULM6 557 aaKnown RBP13.88□□□□□ -0.19
LIG3-205ENST00000585941 FADS3Q9Y5Q0 445 aa13.88□□□□□ -0.19
LIG3-205ENST00000585941 SLC5A10A0PJK1 596 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 ARNTLO00327 626 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 ANGPT2O15123 496 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 MMP20O60882 483 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 SOD1P00441 154 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 KRT6AP02538 564 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 KRT6BP04259 564 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 CD1EP15812 388 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 ME2P23368 584 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 BMP8BP34820 402 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 GDF5P43026 501 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 SLC6A12P48065 614 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 KRT6CP48668 564 aa13.87□□□□□ -0.19
LIG3-205ENST00000585941 CTSCP53634 463 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms